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  4. Sequence
  5. Solyc01g080785.1.1

Solyc01g080785.1.1


Description : transcription factor (MADS/AGL)


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g080785.1.1
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00244900 evm_27.TU.AmTr_v1... Floral homeotic protein PMADS 2 OS=Petunia hybrida 0.03 Archaeplastida
AMTR_s00140p00045380 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
AT2G22540 SVP, AGL22 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT2G22630 AGL17 AGAMOUS-like 17 0.03 Archaeplastida
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT2G45650 AGL6 AGAMOUS-like 6 0.05 Archaeplastida
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT3G54340 AP3, ATAP3 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT3G58780 AGL1, SHP1 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT4G18960 AG K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT5G15800 AGL2, SEP1 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
GSVIVT01006592001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01008139001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01008806001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01009171001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01009815001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01010221001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01010521001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01018446001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01018450001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01018839001 No alias Floral homeotic protein DEFICIENS OS=Antirrhinum majus 0.03 Archaeplastida
GSVIVT01025945001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01033253001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
GSVIVT01035477001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01037026001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01038474001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.07 Archaeplastida
Gb_05359 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Gb_16301 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Gb_41550 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os03g08754.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os03g54170.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os06g01890.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
LOC_Os06g23950.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
MA_10434339g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.02 Archaeplastida
MA_276701g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_6279308g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_629987g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.02 Archaeplastida
MA_9841429g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Pp3c16_19170V3.1 No alias AGAMOUS-like 61 0.02 Archaeplastida
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.02 Archaeplastida
Solyc04g005320.3.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Solyc04g081000.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc06g059970.4.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc08g067230.4.1 No alias No annotation 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 14 61
No external refs found!