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  5. Solyc01g088020.3.1

Solyc01g088020.3.1


Description : scaffolding component Sec31 of coat protein complex


Gene families : OG0003180 (Archaeplastida) Phylogenetic Tree(s): OG0003180_tree ,
OG_05_0004342 (LandPlants) Phylogenetic Tree(s): OG_05_0004342_tree ,
OG_06_0005460 (SeedPlants) Phylogenetic Tree(s): OG_06_0005460_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g088020.3.1
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00143180 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.09 Archaeplastida
AMTR_s00111p00143660 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 Archaeplastida
AT3G63460 No alias transducin family protein / WD-40 repeat family protein 0.15 Archaeplastida
Cpa|evm.model.tig00001154.3 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.05 Archaeplastida
Cpa|evm.model.tig00001154.4 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 Archaeplastida
Cre12.g522450 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.05 Archaeplastida
GSVIVT01001441001 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.22 Archaeplastida
Gb_38895 No alias scaffolding component Sec31 of coat protein complex 0.14 Archaeplastida
LOC_Os07g46370.1 No alias scaffolding component Sec31 of coat protein complex 0.04 Archaeplastida
MA_10435529g0010 No alias scaffolding component Sec31 of coat protein complex 0.06 Archaeplastida
MA_57417g0010 No alias scaffolding component Sec31 of coat protein complex 0.06 Archaeplastida
MA_9006479g0010 No alias scaffolding component Sec31 of coat protein complex 0.09 Archaeplastida
Mp7g09730.1 No alias scaffolding component Sec31 of coat protein complex 0.08 Archaeplastida
Pp3c1_29660V3.1 No alias transducin family protein / WD-40 repeat family protein 0.03 Archaeplastida
Pp3c2_17710V3.1 No alias transducin family protein / WD-40 repeat family protein 0.02 Archaeplastida
Smo230767 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.08 Archaeplastida
Zm00001e010894_P003 No alias scaffolding component Sec31 of coat protein complex 0.27 Archaeplastida
Zm00001e035747_P003 No alias scaffolding component Sec31 of coat protein complex 0.27 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Neighborhood
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016482 cytosolic transport IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
CC GO:0017119 Golgi transport complex IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030119 AP-type membrane coat adaptor complex IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030126 COPI vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030131 clathrin adaptor complex IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
CC GO:0030906 retromer, cargo-selective complex IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0042147 retrograde transport, endosome to Golgi IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:1901567 fatty acid derivative binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
InterPro domains Description Start Stop
IPR009917 SRA1-protein/COPII_Sec31 991 1118
IPR024298 ACE1_Sec16_Sec31 563 757
No external refs found!