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  5. Solyc01g088440.2.1

Solyc01g088440.2.1


Description : no hits & (original description: none)


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0000056 (SeedPlants) Phylogenetic Tree(s): OG_06_0000056_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g088440.2.1
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00161410 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.11 Archaeplastida
AMTR_s00001p00271850 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
AMTR_s00008p00185200 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AMTR_s00129p00065710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AT1G74410 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT2G17730 NIP2 NEP-interacting protein 2 0.02 Archaeplastida
AT2G34000 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G03550 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G60966 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G30400 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G01880 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT5G05280 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G06490 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G58580 ATL63, TL63 TOXICOS EN LEVADURA 63 0.02 Archaeplastida
GSVIVT01012019001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01019530001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Gb_04301 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_08038 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Gb_08091 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_20461 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os01g20910.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os01g53500.1 No alias RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os01g55110.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os02g08200.1 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os02g36300.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os02g45710.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os06g11450.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os06g34880.1 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
LOC_Os08g06090.1 No alias no hits & (original description: none) 0.11 Archaeplastida
LOC_Os08g38460.1 No alias ubiquitin protein ligase (XERICO) 0.02 Archaeplastida
LOC_Os09g29310.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os09g30160.1 No alias ubiquitin protein ligase (XERICO) 0.02 Archaeplastida
LOC_Os09g38110.1 No alias RING-H2 finger protein ATL80 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os12g01750.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os12g42540.1 No alias RING-H2 finger protein ATL70 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10436650g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_114175g0010 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_12363g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_15116g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_152102g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_159453g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_2159g0010 No alias RING-H2 finger protein ATL78 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_229590g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_3929631g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_402876g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_43543g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_462422g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_465316g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_569551g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_61738g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_786911g0010 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
MA_80729g0030 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_904294g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Mp1g19680.1 No alias NEP1-interacting protein-like 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Pp3c1_9560V3.1 No alias TOXICOS EN LEVADURA 2 0.02 Archaeplastida
Pp3c22_15440V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c9_3390V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Smo443606 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Solyc05g008640.1.1 No alias RHA2 signal transducer of abscisic acid perception 0.08 Archaeplastida
Solyc06g064440.3.1 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Solyc09g066300.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc11g005280.1.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc12g005020.2.1 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Zm00001e002233_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e009017_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e010029_P001 No alias ubiquitin protein ligase (XERICO) 0.02 Archaeplastida
Zm00001e014302_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e015470_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e019779_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e020958_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e034829_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e036085_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e036289_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e038107_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e041824_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 50 93
No external refs found!