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  5. Solyc01g094540.4.1

Solyc01g094540.4.1


Description : component Sm-B of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex


Gene families : OG0004360 (Archaeplastida) Phylogenetic Tree(s): OG0004360_tree ,
OG_05_0004546 (LandPlants) Phylogenetic Tree(s): OG_05_0004546_tree ,
OG_06_0006110 (SeedPlants) Phylogenetic Tree(s): OG_06_0006110_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g094540.4.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00109230 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.04 Archaeplastida
AT4G20440 smB small nuclear ribonucleoprotein associated protein B 0.09 Archaeplastida
Cre14.g611150 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
LOC_Os07g07220.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.05 Archaeplastida
MA_10426235g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.05 Archaeplastida
MA_10435493g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.06 Archaeplastida
Mp2g10960.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.02 Archaeplastida
Zm00001e011476_P001 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.03 Archaeplastida
Zm00001e032884_P001 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 9 81
No external refs found!