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  5. Solyc01g096590.3.1

Solyc01g096590.3.1


Description : component RPS20 of SSU proteome


Gene families : OG0002786 (Archaeplastida) Phylogenetic Tree(s): OG0002786_tree ,
OG_05_0002775 (LandPlants) Phylogenetic Tree(s): OG_05_0002775_tree ,
OG_06_0003542 (SeedPlants) Phylogenetic Tree(s): OG_06_0003542_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g096590.3.1
Cluster HCCA: Cluster_251

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00105050 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 Archaeplastida
AT3G45030 No alias Ribosomal protein S10p/S20e family protein 0.25 Archaeplastida
AT3G47370 No alias Ribosomal protein S10p/S20e family protein 0.24 Archaeplastida
AT5G62300 No alias Ribosomal protein S10p/S20e family protein 0.25 Archaeplastida
Cpa|evm.model.tig00000842.28 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.22 Archaeplastida
Cre16.g660150 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 Archaeplastida
GSVIVT01018553001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 Archaeplastida
LOC_Os03g14530.1 No alias component RPS20 of SSU proteome 0.12 Archaeplastida
LOC_Os06g04290.1 No alias component RPS20 of SSU proteome 0.18 Archaeplastida
LOC_Os10g08930.1 No alias component RPS20 of SSU proteome 0.23 Archaeplastida
MA_103406g0010 No alias component RPS20 of SSU proteome 0.16 Archaeplastida
MA_10429759g0010 No alias component RPS20 of SSU proteome 0.23 Archaeplastida
Mp2g09440.1 No alias component RPS20 of SSU proteome 0.33 Archaeplastida
Pp3c14_7180V3.1 No alias Ribosomal protein S10p/S20e family protein 0.16 Archaeplastida
Pp3c15_21510V3.1 No alias Ribosomal protein S10p/S20e family protein 0.18 Archaeplastida
Pp3c1_21860V3.1 No alias Ribosomal protein S10p/S20e family protein 0.1 Archaeplastida
Smo115495 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 Archaeplastida
Zm00001e001045_P001 No alias component RPS20 of SSU proteome 0.23 Archaeplastida
Zm00001e036579_P001 No alias component RPS20 of SSU proteome 0.29 Archaeplastida
Zm00001e038574_P001 No alias component RPS20 of SSU proteome 0.27 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR027486 Ribosomal_S10_dom 25 119
No external refs found!