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  5. Solyc01g099230.3.1

Solyc01g099230.3.1


Description : RNA editing factor (OZ-type)


Gene families : OG0001770 (Archaeplastida) Phylogenetic Tree(s): OG0001770_tree ,
OG_05_0001246 (LandPlants) Phylogenetic Tree(s): OG_05_0001246_tree ,
OG_06_0001272 (SeedPlants) Phylogenetic Tree(s): OG_06_0001272_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g099230.3.1
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
AT1G55040 No alias zinc finger (Ran-binding) family protein 0.06 Archaeplastida
GSVIVT01000088001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01008444001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_05351 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_13912 No alias RNA editing factor (OZ-type) 0.03 Archaeplastida
LOC_Os03g50120.1 No alias RNA editing factor (OZ-type) 0.04 Archaeplastida
LOC_Os03g50430.1 No alias RNA editing factor (OZ-type) 0.03 Archaeplastida
LOC_Os07g22024.1 No alias RNA editing factor (OZ-type) 0.03 Archaeplastida
MA_10436123g0010 No alias RNA editing factor (OZ-type) 0.02 Archaeplastida
MA_10436123g0020 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_854125g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e009343_P002 No alias No annotation 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Neighborhood
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0080009 mRNA methylation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 383 410
IPR001876 Znf_RanBP2 349 377
No external refs found!