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  5. Solyc01g099530.3.1

Solyc01g099530.3.1


Description : Pentatricopeptide repeat-containing protein At5g14770, mitochondrial OS=Arabidopsis thaliana (sp|q9ler0|pp381_arath : 664.0)


Gene families : OG0000820 (Archaeplastida) Phylogenetic Tree(s): OG0000820_tree ,
OG_05_0000926 (LandPlants) Phylogenetic Tree(s): OG_05_0000926_tree ,
OG_06_0001333 (SeedPlants) Phylogenetic Tree(s): OG_06_0001333_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g099530.3.1
Cluster HCCA: Cluster_201

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00253560 evm_27.TU.AmTr_v1... Desiccation-related protein PCC13-62 OS=Craterostigma... 0.11 Archaeplastida
AMTR_s00016p00253590 evm_27.TU.AmTr_v1... Desiccation-related protein PCC13-62 OS=Craterostigma... 0.11 Archaeplastida
AMTR_s00016p00253610 evm_27.TU.AmTr_v1... Desiccation-related protein PCC13-62 OS=Craterostigma... 0.02 Archaeplastida
AMTR_s00106p00055220 evm_27.TU.AmTr_v1... Desiccation-related protein PCC13-62 OS=Craterostigma... 0.03 Archaeplastida
AT1G47980 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.16 Archaeplastida
GSVIVT01027969001 No alias Desiccation-related protein PCC13-62 OS=Craterostigma... 0.03 Archaeplastida
GSVIVT01035573001 No alias Desiccation-related protein PCC13-62 OS=Craterostigma... 0.05 Archaeplastida
Gb_11266 No alias Desiccation-related protein PCC13-62 OS=Craterostigma... 0.05 Archaeplastida
Gb_15806 No alias Desiccation-related protein PCC13-62 OS=Craterostigma... 0.05 Archaeplastida
Gb_32514 No alias Desiccation-related protein PCC13-62 OS=Craterostigma... 0.03 Archaeplastida
LOC_Os03g22470.1 No alias Desiccation-related protein PCC13-62 OS=Craterostigma... 0.03 Archaeplastida
LOC_Os05g05920.1 No alias Desiccation-related protein PCC13-62 OS=Craterostigma... 0.14 Archaeplastida
MA_10431585g0010 No alias Desiccation-related protein PCC13-62 OS=Craterostigma... 0.04 Archaeplastida
MA_10432841g0010 No alias Desiccation-related protein PCC13-62 OS=Craterostigma... 0.04 Archaeplastida
MA_276729g0010 No alias Desiccation-related protein PCC13-62 OS=Craterostigma... 0.05 Archaeplastida
MA_6353194g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp6g16310.1 No alias Desiccation-related protein PCC13-62 OS=Craterostigma... 0.02 Archaeplastida
Smo15031 No alias Desiccation-related protein PCC13-62 OS=Craterostigma... 0.03 Archaeplastida
Smo415476 No alias No description available 0.02 Archaeplastida
Zm00001e001638_P001 No alias Desiccation-related protein PCC13-62 OS=Craterostigma... 0.03 Archaeplastida
Zm00001e029735_P001 No alias Desiccation-related protein PCC13-62 OS=Craterostigma... 0.1 Archaeplastida
Zm00001e040816_P001 No alias Desiccation-related protein PCC13-62 OS=Craterostigma... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 664 694
IPR002885 Pentatricopeptide_repeat 918 939
IPR002885 Pentatricopeptide_repeat 456 486
IPR002885 Pentatricopeptide_repeat 490 538
IPR002885 Pentatricopeptide_repeat 1185 1232
IPR002885 Pentatricopeptide_repeat 836 885
IPR002885 Pentatricopeptide_repeat 941 988
IPR002885 Pentatricopeptide_repeat 1010 1058
IPR002885 Pentatricopeptide_repeat 1121 1164
IPR002885 Pentatricopeptide_repeat 767 815
IPR002885 Pentatricopeptide_repeat 561 608
IPR002885 Pentatricopeptide_repeat 1255 1304
IPR002885 Pentatricopeptide_repeat 697 744
No external refs found!