Solyc01g099830.3.1

Description : component RPL22 of LSU proteome component

Gene families : OG0002238 (Archaeplastida) Phylogenetic Tree(s): OG0002238_tree ,
OG_05_0002172 (LandPlants) Phylogenetic Tree(s): OG_05_0002172_tree ,
OG_06_0002838 (SeedPlants) Phylogenetic Tree(s): OG_06_0002838_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g099830.3.1
Cluster	HCCA: Cluster_86

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00069p00189250	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	Archaeplastida
AT3G05560	No alias	Ribosomal L22e protein family	0.43	Archaeplastida
AT5G27770	No alias	Ribosomal L22e protein family	0.51	Archaeplastida
Cpa\|evm.model.tig00001206.7	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.2	Archaeplastida
Cre07.g357850	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.44	Archaeplastida
GSVIVT01028021001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.17	Archaeplastida
GSVIVT01031130001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.38	Archaeplastida
GSVIVT01031158001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.35	Archaeplastida
GSVIVT01035141001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.37	Archaeplastida
Gb_08874	No alias	component RPL22 of LSU proteome component	0.22	Archaeplastida
Gb_36164	No alias	component RPL22 of LSU proteome component	0.24	Archaeplastida
LOC_Os03g22340.1	No alias	component RPL22 of LSU proteome component	0.4	Archaeplastida
LOC_Os07g47710.1	No alias	component RPL22 of LSU proteome component	0.33	Archaeplastida
MA_130453g0010	No alias	component RPL22 of LSU proteome component	0.26	Archaeplastida
Mp4g02920.1	No alias	component RPL22 of LSU proteome component	0.39	Archaeplastida
Pp3c11_630V3.1	No alias	Ribosomal L22e protein family	0.37	Archaeplastida
Pp3c11_680V3.1	No alias	Ribosomal L22e protein family	0.09	Archaeplastida
Pp3c16_17710V3.1	No alias	Ribosomal L22e protein family	0.05	Archaeplastida
Pp3c1_120V3.1	No alias	Ribosomal L22e protein family	0.41	Archaeplastida
Pp3c2_28500V3.1	No alias	Ribosomal L22e protein family	0.51	Archaeplastida
Pp3c2_28510V3.1	No alias	Ribosomal L22e protein family	0.51	Archaeplastida
Pp3c6_5370V3.1	No alias	Ribosomal L22e protein family	0.04	Archaeplastida
Pp3c7_27030V3.1	No alias	Ribosomal L22e protein family	0.22	Archaeplastida
Smo270704	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	Archaeplastida
Zm00001e010958_P001	No alias	component RPL22 of LSU proteome component	0.24	Archaeplastida
Zm00001e035835_P001	No alias	component RPL22 of LSU proteome component	0.51	Archaeplastida
Zm00001e038221_P001	No alias	component RPL22 of LSU proteome component	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002671	Ribosomal_L22e	15	123

External Links

No external refs found!

Solyc01g099830.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation