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  5. AMTR_s00022p00097040

AMTR_s00022p00097040 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.79

Description : Cell wall.cellulose.synthesis.cellulose microfibrils and hemicellulose interaction.CTL-type protein


Gene families : OG0000104 (Archaeplastida) Phylogenetic Tree(s): OG0000104_tree ,
OG_05_0002919 (LandPlants) Phylogenetic Tree(s): OG_05_0002919_tree ,
OG_06_0003490 (SeedPlants) Phylogenetic Tree(s): OG_06_0003490_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00097040
Cluster HCCA: Cluster_240

Target Alias Description ECC score Gene Family Method Actions
AT1G05850 HOT2, ELP,... Chitinase family protein 0.05 Archaeplastida
AT1G56680 No alias Chitinase family protein 0.03 Archaeplastida
AT2G43610 No alias Chitinase family protein 0.04 Archaeplastida
AT3G16920 CTL2, ATCTL2 chitinase-like protein 2 0.05 Archaeplastida
GSVIVT01031685001 No alias Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.04 Archaeplastida
GSVIVT01035029001 No alias Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.04 Archaeplastida
Gb_05672 No alias CTL cellulose microfibrils and hemicellulose interaction protein 0.02 Archaeplastida
Gb_10245 No alias CTL cellulose microfibrils and hemicellulose interaction protein 0.06 Archaeplastida
Gb_20765 No alias Chitinase 5 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Gb_29992 No alias Chitinase 5 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Gb_29993 No alias Chitinase 5 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Gb_34557 No alias Chitinase 6 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Gb_34558 No alias Chitinase 6 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os09g32080.2 No alias CTL cellulose microfibrils and hemicellulose interaction protein 0.06 Archaeplastida
MA_10435764g0010 No alias Chitinase-like protein 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_114934g0010 No alias Chitinase 4 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_448160g0010 No alias Chitinase 5 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_726207g0010 No alias Chitinase-like protein 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp2g21810.1 No alias Chitinase 1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Mp2g24440.1 No alias Endochitinase CH25 OS=Brassica napus... 0.03 Archaeplastida
Mp4g04430.1 No alias no description available(sp|q949h3|chi1_hevbr : 210.0) 0.02 Archaeplastida
Mp7g04510.1 No alias CTL cellulose microfibrils and hemicellulose interaction protein 0.06 Archaeplastida
Pp3c13_4480V3.1 No alias Chitinase family protein 0.05 Archaeplastida
Pp3c24_15000V3.1 No alias Chitinase family protein 0.05 Archaeplastida
Pp3c26_2880V3.1 No alias Chitinase family protein 0.04 Archaeplastida
Smo227948 No alias Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.02 Archaeplastida
Solyc09g098540.3.1 No alias CTL cellulose microfibrils and hemicellulose interaction protein 0.04 Archaeplastida
Zm00001e034566_P001 No alias CTL cellulose microfibrils and hemicellulose interaction protein 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEA Interproscan
BP GO:0006032 chitin catabolic process IEA Interproscan
BP GO:0016998 cell wall macromolecule catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003840 obsolete gamma-glutamyltransferase activity IEP Neighborhood
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000726 Glyco_hydro_19_cat 194 347
IPR000726 Glyco_hydro_19_cat 51 116
No external refs found!