Solyc01g102260.3.1

Description : transcription factor (MADS/AGL)

Gene families : OG0002515 (Archaeplastida) Phylogenetic Tree(s): OG0002515_tree ,
OG_05_0001893 (LandPlants) Phylogenetic Tree(s): OG_05_0001893_tree ,
OG_06_0001162 (SeedPlants) Phylogenetic Tree(s): OG_06_0001162_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g102260.3.1
Cluster	HCCA: Cluster_138

Target	Alias	Description	ECC score	Gene Family Method
AT3G05860	No alias	MADS-box transcription factor family protein	0.04	Archaeplastida
AT5G26630	No alias	MADS-box transcription factor family protein	0.03	Archaeplastida
GSVIVT01031333001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
LOC_Os01g18440.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os03g38610.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os04g24810.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004180	carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Neighborhood
MF	GO:0008238	exopeptidase activity	IEP	Neighborhood
BP	GO:0010215	cellulose microfibril organization	IEP	Neighborhood
BP	GO:0030198	extracellular matrix organization	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
BP	GO:0043062	extracellular structure organization	IEP	Neighborhood
MF	GO:0070008	serine-type exopeptidase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	51

External Links

No external refs found!