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  5. Solyc01g102790.3.1

Solyc01g102790.3.1


Description : Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana (sp|q9m9r6|ppr43_arath : 642.0)


Gene families : OG0025230 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0024339 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0023188 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g102790.3.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01023129001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 456 503
IPR002885 Pentatricopeptide_repeat 63 109
IPR002885 Pentatricopeptide_repeat 354 401
IPR002885 Pentatricopeptide_repeat 222 268
IPR002885 Pentatricopeptide_repeat 297 319
IPR002885 Pentatricopeptide_repeat 134 159
IPR002885 Pentatricopeptide_repeat 526 549
IPR002885 Pentatricopeptide_repeat 164 192
IPR002885 Pentatricopeptide_repeat 418 453
IPR032867 DYW_dom 625 747
No external refs found!