1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00022p00121040

AMTR_s00022p00121040 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.113

Description : Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0001191 (SeedPlants) Phylogenetic Tree(s): OG_06_0001191_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00121040
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AT1G52640 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT1G77360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G49730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G15010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01007280001 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.03 Archaeplastida
GSVIVT01010329001 No alias Pentatricopeptide repeat-containing protein At3g04130,... 0.03 Archaeplastida
Gb_06907 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.05 Archaeplastida
Gb_08432 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.05 Archaeplastida
Gb_10944 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.07 Archaeplastida
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.05 Archaeplastida
Gb_13617 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.05 Archaeplastida
Gb_19758 No alias Putative pentatricopeptide repeat-containing protein... 0.09 Archaeplastida
Gb_21593 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.04 Archaeplastida
Gb_31799 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_41835 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.05 Archaeplastida
LOC_Os03g53490.1 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.03 Archaeplastida
LOC_Os05g28720.1 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.03 Archaeplastida
LOC_Os08g28180.1 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.03 Archaeplastida
MA_10432868g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_21580g0010 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.05 Archaeplastida
MA_6218g0010 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 Archaeplastida
MA_929381g0010 No alias OTP43 mitochondrial RNA splicing factor 0.03 Archaeplastida
MA_933431g0010 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.03 Archaeplastida
Solyc03g112560.4.1 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.02 Archaeplastida
Solyc03g116540.1.1 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.07 Archaeplastida
Solyc04g081950.4.1 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.05 Archaeplastida
Solyc09g082390.3.1 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.07 Archaeplastida
Zm00001e006773_P001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.05 Archaeplastida
Zm00001e015617_P001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.05 Archaeplastida
Zm00001e025816_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e036197_P001 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
CC GO:0000922 spindle pole IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003964 RNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004003 ATP-dependent DNA helicase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005815 microtubule organizing center IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0043138 3'-5' DNA helicase activity IEP Neighborhood
MF GO:0043140 ATP-dependent 3'-5' DNA helicase activity IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071897 DNA biosynthetic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 122 168
IPR002885 Pentatricopeptide_repeat 191 237
IPR002885 Pentatricopeptide_repeat 262 308
IPR002885 Pentatricopeptide_repeat 330 379
IPR002885 Pentatricopeptide_repeat 91 120
IPR002885 Pentatricopeptide_repeat 57 86
No external refs found!