Description : dual-specificity tRNA/rRNA pseudouridine synthase (RluA)

Gene families : OG0002696 (Archaeplastida) Phylogenetic Tree(s): OG0002696_tree ,
OG_05_0002930 (LandPlants) Phylogenetic Tree(s): OG_05_0002930_tree ,
OG_06_0009378 (SeedPlants) Phylogenetic Tree(s): OG_06_0009378_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: Solyc01g107580.4.1
Cluster HCCA: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00146p00072100 evm_27.TU.AmTr_v1... RNA processing.RNA... 0.04 Archaeplastida
MA_807843g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp2g19020.1 No alias dual-specificity tRNA/rRNA pseudouridine synthase (RluA) 0.02 Archaeplastida
Zm00001e033524_P004 No alias dual-specificity tRNA/rRNA pseudouridine synthase (RluA) 0.05 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluD 195 365
No external refs found!