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  5. Solyc01g107870.3.1

Solyc01g107870.3.1


Description : mRNA poly-A-tail binding factor (PABP)


Gene families : OG0000771 (Archaeplastida) Phylogenetic Tree(s): OG0000771_tree ,
OG_05_0000645 (LandPlants) Phylogenetic Tree(s): OG_05_0000645_tree ,
OG_06_0001351 (SeedPlants) Phylogenetic Tree(s): OG_06_0001351_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g107870.3.1

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021244.19 No alias Protein biosynthesis.translation initiation.mRNA... 0.02 Archaeplastida
MA_36585g0020 No alias mRNA poly-A-tail binding factor (PABP) 0.02 Archaeplastida
Mp7g18970.1 No alias mRNA poly-A-tail binding factor (PABP) 0.01 Archaeplastida
Zm00001e009430_P002 No alias mRNA poly-A-tail binding factor (PABP) 0.03 Archaeplastida
Zm00001e033592_P004 No alias mRNA poly-A-tail binding factor (PABP) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 111 179
IPR000504 RRM_dom 305 373
IPR000504 RRM_dom 202 270
IPR000504 RRM_dom 23 93
IPR002004 PABP_HYD 551 617
No external refs found!