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  5. Solyc01g108920.4.1

Solyc01g108920.4.1


Description : no hits & (original description: none)


Gene families : OG0001307 (Archaeplastida) Phylogenetic Tree(s): OG0001307_tree ,
OG_05_0001836 (LandPlants) Phylogenetic Tree(s): OG_05_0001836_tree ,
OG_06_0005279 (SeedPlants) Phylogenetic Tree(s): OG_06_0005279_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g108920.4.1
Cluster HCCA: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00210260 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT2G15900 No alias Phox-associated domain;Phox-like;Sorting nexin, C-terminal 0.03 Archaeplastida
GSVIVT01031845001 No alias No description available 0.06 Archaeplastida
LOC_Os05g50660.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os11g06040.1 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10428627g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_10431749g0030 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c2_2780V3.1 No alias Phox-associated domain;Phox-like;Sorting nexin, C-terminal 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0035091 phosphatidylinositol binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
BP GO:0005984 disaccharide metabolic process IEP Neighborhood
BP GO:0005991 trehalose metabolic process IEP Neighborhood
BP GO:0005992 trehalose biosynthetic process IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009311 oligosaccharide metabolic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001683 Phox 553 656
IPR003114 Phox_assoc 106 282
IPR013937 Sorting_nexin_C 859 998
No external refs found!