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  5. Solyc01g110080.2.1

Solyc01g110080.2.1


Description : plant-specific E3 ubiquitin ligase (RSL/RFA)


Gene families : OG0000316 (Archaeplastida) Phylogenetic Tree(s): OG0000316_tree ,
OG_05_0000889 (LandPlants) Phylogenetic Tree(s): OG_05_0000889_tree ,
OG_06_0018824 (SeedPlants) Phylogenetic Tree(s): OG_06_0018824_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g110080.2.1
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AT2G25370 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT3G45460 No alias IBR domain containing protein 0.05 Archaeplastida
AT3G45470 No alias IBR domain containing protein 0.03 Archaeplastida
AT3G45480 No alias RING/U-box protein with C6HC-type zinc finger 0.06 Archaeplastida
AT3G45540 No alias RING/U-box protein with C6HC-type zinc finger 0.04 Archaeplastida
AT3G45560 No alias zinc finger (C3HC4-type RING finger) family protein 0.06 Archaeplastida
AT3G45570 No alias RING/U-box protein with C6HC-type zinc finger domain 0.06 Archaeplastida
Cpa|evm.model.tig00021035.20 No alias No description available 0.01 Archaeplastida
Gb_32390 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 Archaeplastida
LOC_Os08g35060.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.02 Archaeplastida
LOC_Os08g35070.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.02 Archaeplastida
Solyc06g005000.3.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002867 IBR_dom 150 187
IPR002867 IBR_dom 85 131
No external refs found!