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  5. Solyc01g111420.3.1

Solyc01g111420.3.1


Description : no hits & (original description: none)


Gene families : OG0002233 (Archaeplastida) Phylogenetic Tree(s): OG0002233_tree ,
OG_05_0002168 (LandPlants) Phylogenetic Tree(s): OG_05_0002168_tree ,
OG_06_0001805 (SeedPlants) Phylogenetic Tree(s): OG_06_0001805_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g111420.3.1
Cluster HCCA: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
AT1G06380 No alias Ribosomal protein L1p/L10e family 0.1 Archaeplastida
AT2G42650 No alias Ribosomal protein L1p/L10e family 0.08 Archaeplastida
AT3G58660 No alias Ribosomal protein L1p/L10e family 0.08 Archaeplastida
Cpa|evm.model.tig00021721.13 No alias No description available 0.05 Archaeplastida
Cre07.g314100 No alias No description available 0.07 Archaeplastida
GSVIVT01000789001 No alias No description available 0.13 Archaeplastida
LOC_Os05g48422.1 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_173360g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_550291g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_7868715g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_9529545g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp1g11260.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Pp3c12_11430V3.1 No alias Ribosomal protein L1p/L10e family 0.09 Archaeplastida
Pp3c8_1610V3.1 No alias Ribosomal protein L1p/L10e family 0.07 Archaeplastida
Zm00001e026491_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e032390_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042274 ribosomal small subunit biogenesis IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 24 237
No external refs found!