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  5. Solyc02g030633.1.1

Solyc02g030633.1.1


Description : transcriptional co-repressor (AFP/NINJA)


Gene families : OG0000721 (Archaeplastida) Phylogenetic Tree(s): OG0000721_tree ,
OG_05_0000424 (LandPlants) Phylogenetic Tree(s): OG_05_0000424_tree ,
OG_06_0000404 (SeedPlants) Phylogenetic Tree(s): OG_06_0000404_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g030633.1.1

Target Alias Description ECC score Gene Family Method Actions
AT3G29575 AFP3 ABI five binding protein 3 0.04 Archaeplastida
GSVIVT01003927001 No alias RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.05 Archaeplastida
GSVIVT01008104001 No alias RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.02 Archaeplastida
GSVIVT01012225001 No alias RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.03 Archaeplastida
LOC_Os01g68820.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os03g11550.1 No alias transcriptional co-repressor (AFP/NINJA) 0.06 Archaeplastida
MA_16384g0010 No alias transcriptional co-repressor (AFP/NINJA) 0.07 Archaeplastida
Pp3c1_21920V3.1 No alias novel interactor of JAZ 0.02 Archaeplastida
Solyc02g030630.2.1 No alias No annotation 0.11 Archaeplastida
Solyc02g032140.3.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc02g032680.2.1 No alias transcriptional co-repressor (AFP/NINJA) 0.08 Archaeplastida
Solyc04g005380.3.1 No alias transcriptional co-repressor (AFP/NINJA) 0.06 Archaeplastida
Zm00001e035495_P001 No alias transcriptional co-repressor (AFP/NINJA) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR032308 Jas 77 112
No external refs found!