1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc02g062240.3.1

Solyc02g062240.3.1


Description : component Sm-D3 of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex


Gene families : OG0001157 (Archaeplastida) Phylogenetic Tree(s): OG0001157_tree ,
OG_05_0002856 (LandPlants) Phylogenetic Tree(s): OG_05_0002856_tree ,
OG_06_0003290 (SeedPlants) Phylogenetic Tree(s): OG_06_0003290_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g062240.3.1
Cluster HCCA: Cluster_222

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00047670 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
AMTR_s00045p00214370 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 Archaeplastida
AT1G20580 No alias Small nuclear ribonucleoprotein family protein 0.07 Archaeplastida
Cpa|evm.model.tig00000480.60 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.01 Archaeplastida
Cpa|evm.model.tig00020912.17 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 Archaeplastida
Cre10.g455300 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 Archaeplastida
GSVIVT01023894001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
LOC_Os02g01250.1 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.04 Archaeplastida
MA_98884g0010 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.03 Archaeplastida
Pp3c18_21750V3.1 No alias Small nuclear ribonucleoprotein family protein 0.03 Archaeplastida
Pp3c1_35400V3.1 No alias Small nuclear ribonucleoprotein family protein 0.02 Archaeplastida
Smo112116 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
Zm00001e001000_P001 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.07 Archaeplastida
Zm00001e013395_P002 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
CC GO:0030289 protein phosphatase 4 complex IEP Neighborhood
CC GO:0032299 ribonuclease H2 complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 11 74
No external refs found!