1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc02g067190.4.1

Solyc02g067190.4.1


Description : Casparian strip membrane protein 1 OS=Solanum tuberosum (sp|p0di44|casp1_soltu : 261.0)


Gene families : OG0000389 (Archaeplastida) Phylogenetic Tree(s): OG0000389_tree ,
OG_05_0000192 (LandPlants) Phylogenetic Tree(s): OG_05_0000192_tree ,
OG_06_0001302 (SeedPlants) Phylogenetic Tree(s): OG_06_0001302_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g067190.4.1
Cluster HCCA: Cluster_196

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00265970 evm_27.TU.AmTr_v1... Casparian strip membrane protein 3 OS=Sorghum bicolor 0.03 Archaeplastida
AMTR_s00016p00177260 evm_27.TU.AmTr_v1... CASP-like protein 1F1 OS=Ricinus communis 0.04 Archaeplastida
AMTR_s00040p00135930 evm_27.TU.AmTr_v1... Casparian strip membrane protein 2 OS=Vitis vinifera 0.04 Archaeplastida
AMTR_s00057p00159510 evm_27.TU.AmTr_v1... CASP-like protein 1D1 OS=Ricinus communis 0.04 Archaeplastida
AMTR_s00092p00142720 evm_27.TU.AmTr_v1... CASP-like protein 1B2 OS=Populus trichocarpa 0.04 Archaeplastida
AT1G03700 No alias Uncharacterised protein family (UPF0497) 0.12 Archaeplastida
AT1G14160 No alias Uncharacterised protein family (UPF0497) 0.06 Archaeplastida
AT2G27370 No alias Uncharacterised protein family (UPF0497) 0.05 Archaeplastida
AT2G36100 No alias Uncharacterised protein family (UPF0497) 0.06 Archaeplastida
AT3G06390 No alias Uncharacterised protein family (UPF0497) 0.06 Archaeplastida
AT3G11550 No alias Uncharacterised protein family (UPF0497) 0.05 Archaeplastida
AT4G03540 No alias Uncharacterised protein family (UPF0497) 0.07 Archaeplastida
AT4G20390 No alias Uncharacterised protein family (UPF0497) 0.05 Archaeplastida
AT5G06200 No alias Uncharacterised protein family (UPF0497) 0.05 Archaeplastida
AT5G15290 No alias Uncharacterised protein family (UPF0497) 0.04 Archaeplastida
AT5G44550 No alias Uncharacterised protein family (UPF0497) 0.06 Archaeplastida
GSVIVT01020544001 No alias CASP-like protein 1C2 OS=Vitis vinifera 0.04 Archaeplastida
GSVIVT01033894001 No alias Casparian strip membrane protein 1 OS=Vitis vinifera 0.03 Archaeplastida
GSVIVT01037957001 No alias CASP-like protein 1B2 OS=Vitis vinifera 0.04 Archaeplastida
LOC_Os04g38690.1 No alias Casparian strip membrane protein 1 OS=Oryza rufipogon... 0.06 Archaeplastida
LOC_Os04g58760.1 No alias Casparian strip membrane protein 1 OS=Oryza sativa... 0.06 Archaeplastida
LOC_Os05g15630.1 No alias CASP-like protein BLE3 OS=Oryza sativa subsp. indica... 0.03 Archaeplastida
LOC_Os06g12500.1 No alias Casparian strip membrane protein 3 OS=Oryza sativa... 0.07 Archaeplastida
LOC_Os08g01160.1 No alias Casparian strip membrane protein 2 OS=Oryza sativa... 0.09 Archaeplastida
MA_1041g0010 No alias Casparian strip membrane protein 2 OS=Triphysaria... 0.08 Archaeplastida
MA_3155878g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_5227376g0010 No alias Casparian strip membrane protein 1 OS=Picea glauca... 0.06 Archaeplastida
MA_5618864g0010 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.03 Archaeplastida
MA_64798g0010 No alias Casparian strip membrane protein 1 OS=Picea glauca... 0.05 Archaeplastida
MA_90653g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_93690g0010 No alias Casparian strip membrane protein 1 OS=Pinus taeda... 0.04 Archaeplastida
MA_94788g0010 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.03 Archaeplastida
Pp3c10_17030V3.1 No alias Uncharacterised protein family (UPF0497) 0.02 Archaeplastida
Pp3c4_1550V3.1 No alias Uncharacterised protein family (UPF0497) 0.03 Archaeplastida
Zm00001e015806_P001 No alias Casparian strip membrane protein 3 OS=Sorghum bicolor... 0.03 Archaeplastida
Zm00001e026902_P001 No alias CASP-like protein 1C2 OS=Zea mays (sp|b6szu6|cspl5_maize : 227.0) 0.03 Archaeplastida
Zm00001e036094_P001 No alias Casparian strip membrane protein 1 OS=Zea mays... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
InterPro domains Description Start Stop
IPR006702 CASP_dom 9 157
No external refs found!