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  5. Solyc02g068760.4.1

Solyc02g068760.4.1


Description : ndhA-specific mRNA splicing factor


Gene families : OG0008665 (Archaeplastida) Phylogenetic Tree(s): OG0008665_tree ,
OG_05_0009075 (LandPlants) Phylogenetic Tree(s): OG_05_0009075_tree ,
OG_06_0011463 (SeedPlants) Phylogenetic Tree(s): OG_06_0011463_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g068760.4.1
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AT2G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.1 Archaeplastida
GSVIVT01012065001 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.14 Archaeplastida
Gb_35563 No alias ndhA-specific mRNA splicing factor 0.04 Archaeplastida
LOC_Os02g07360.1 No alias ndhA-specific mRNA splicing factor. plastidial RNA... 0.11 Archaeplastida
Mp1g28660.1 No alias ndhA-specific mRNA splicing factor. plastidial RNA... 0.02 Archaeplastida
Pp3c16_5890V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
Smo109632 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.03 Archaeplastida
Zm00001e013734_P002 No alias ndhA-specific mRNA splicing factor 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006772 thiamine metabolic process IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009228 thiamine biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0042723 thiamine-containing compound metabolic process IEP Neighborhood
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 434 493
IPR033443 PPR_long 284 426
IPR002885 Pentatricopeptide_repeat 239 268
IPR002885 Pentatricopeptide_repeat 518 547
IPR002885 Pentatricopeptide_repeat 204 226
IPR002885 Pentatricopeptide_repeat 550 598
No external refs found!