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  5. Solyc02g069280.2.1

Solyc02g069280.2.1


Description : siRNA-binding factor (AGO2) of non-canonical RdDM pathway


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0002747 (LandPlants) Phylogenetic Tree(s): OG_05_0002747_tree ,
OG_06_0002302 (SeedPlants) Phylogenetic Tree(s): OG_06_0002302_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g069280.2.1
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00114260 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
AMTR_s00083p00065730 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT2G27040 AGO4, OCP11 Argonaute family protein 0.03 Archaeplastida
AT2G27880 AGO5 Argonaute family protein 0.03 Archaeplastida
AT5G21030 No alias PAZ domain-containing protein / piwi domain-containing protein 0.04 Archaeplastida
AT5G21150 AGO9 Argonaute family protein 0.03 Archaeplastida
GSVIVT01001941001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
GSVIVT01030512001 No alias Chromatin organisation.DNA methylation.canonical... 0.07 Archaeplastida
GSVIVT01033726001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
Gb_13708 No alias siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.02 Archaeplastida
LOC_Os06g51310.2 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
MA_10431691g0010 No alias Protein argonaute 16 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_14457g0010 No alias Protein argonaute 4A OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_14457g0020 No alias Protein argonaute 4B OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Smo98227 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
Zm00001e011855_P002 No alias Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e013340_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR014811 ArgoL1 324 366
IPR032474 Argonaute_N 178 314
IPR003165 Piwi 660 950
IPR003100 PAZ_dom 380 498
No external refs found!