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  5. Solyc02g079300.3.1

Solyc02g079300.3.1


Description : histone demethylase (KDM3). transcription factor (JUMONJI)


Gene families : OG0000515 (Archaeplastida) Phylogenetic Tree(s): OG0000515_tree ,
OG_05_0000563 (LandPlants) Phylogenetic Tree(s): OG_05_0000563_tree ,
OG_06_0017009 (SeedPlants) Phylogenetic Tree(s): OG_06_0017009_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g079300.3.1
Cluster HCCA: Cluster_277

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00058110 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 Archaeplastida
AT1G11950 No alias Transcription factor jumonji (jmjC) domain-containing protein 0.03 Archaeplastida
AT4G21430 B160 Zinc finger, RING-type;Transcription factor... 0.03 Archaeplastida
LOC_Os03g31594.1 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 Archaeplastida
Pp3c16_210V3.1 No alias Transcription factor jumonji (jmjC) domain-containing protein 0.02 Archaeplastida
Pp3c4_21970V3.1 No alias transcription factor jumonji (jmjC) domain-containing protein 0.02 Archaeplastida
Zm00001e023535_P001 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 Archaeplastida
Zm00001e025393_P001 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR014977 WRC_dom 8 49
IPR003347 JmjC_dom 849 948
No external refs found!