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  5. Solyc02g079400.3.1

Solyc02g079400.3.1


Description : E3 ubiquitin-protein ligase CSU1 OS=Arabidopsis thaliana (sp|q9sy88|csu1_arath : 423.0)


Gene families : OG0006345 (Archaeplastida) Phylogenetic Tree(s): OG0006345_tree ,
OG_05_0007798 (LandPlants) Phylogenetic Tree(s): OG_05_0007798_tree ,
OG_06_0009588 (SeedPlants) Phylogenetic Tree(s): OG_06_0009588_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g079400.3.1
Cluster HCCA: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
Pp3c9_6940V3.1 No alias phosphoinositide binding 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043486 histone exchange IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
InterPro domains Description Start Stop
IPR027799 Rtf2_RING-finger 183 269
IPR031790 Znf-NOSIP 5 75
No external refs found!