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  5. Solyc02g080270.3.1

Solyc02g080270.3.1


Description : component VPS28 of ESCRT-I complex


Gene families : OG0004378 (Archaeplastida) Phylogenetic Tree(s): OG0004378_tree ,
OG_05_0004887 (LandPlants) Phylogenetic Tree(s): OG_05_0004887_tree ,
OG_06_0005884 (SeedPlants) Phylogenetic Tree(s): OG_06_0005884_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g080270.3.1
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
AT4G05000 VPS28-2, VPS28-1 Vacuolar protein sorting-associated protein VPS28 family protein 0.03 Archaeplastida
AT4G21560 VPS28-1 vacuolar protein sorting-associated protein 28 homolog 1 0.03 Archaeplastida
Cre16.g678100 No alias Vesicle trafficking.endomembrane trafficking.ESCRT... 0.02 Archaeplastida
GSVIVT01006715001 No alias Vesicle trafficking.endomembrane trafficking.ESCRT... 0.04 Archaeplastida
Gb_37209 No alias component VPS28 of ESCRT-I complex 0.02 Archaeplastida
MA_10432906g0010 No alias component VPS28 of ESCRT-I complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEA Interproscan
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004107 chorismate synthase activity IEP Neighborhood
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR007143 Vps28 83 269
No external refs found!