1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00022p00248730

AMTR_s00022p00248730 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.376

Description : Pentatricopeptide repeat-containing protein At1g71210, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0006096 (Archaeplastida) Phylogenetic Tree(s): OG0006096_tree ,
OG_05_0004418 (LandPlants) Phylogenetic Tree(s): OG_05_0004418_tree ,
OG_06_0003203 (SeedPlants) Phylogenetic Tree(s): OG_06_0003203_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00248730
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AT1G71210 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Gb_27816 No alias Pentatricopeptide repeat-containing protein At1g71210,... 0.03 Archaeplastida
Gb_27824 No alias Pentatricopeptide repeat-containing protein At1g71210,... 0.03 Archaeplastida
LOC_Os02g03530.1 No alias Pentatricopeptide repeat-containing protein At1g71210,... 0.04 Archaeplastida
Pp3c1_6490V3.1 No alias proton gradient regulation 3 0.02 Archaeplastida
Solyc07g042030.2.1 No alias Pentatricopeptide repeat-containing protein At1g71210,... 0.03 Archaeplastida
Zm00001e013539_P003 No alias no hits & (original description: none) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006353 DNA-templated transcription, termination IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016833 oxo-acid-lyase activity IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 388 434
IPR002885 Pentatricopeptide_repeat 805 856
IPR002885 Pentatricopeptide_repeat 533 557
IPR002885 Pentatricopeptide_repeat 672 700
IPR002885 Pentatricopeptide_repeat 182 207
IPR002885 Pentatricopeptide_repeat 354 383
IPR002885 Pentatricopeptide_repeat 253 276
IPR002885 Pentatricopeptide_repeat 319 340
IPR002885 Pentatricopeptide_repeat 602 633
No external refs found!