Solyc02g081960.3.1

Description : component SF3A1 of splicing factor 3A complex

Gene families : OG0003158 (Archaeplastida) Phylogenetic Tree(s): OG0003158_tree ,
OG_05_0003043 (LandPlants) Phylogenetic Tree(s): OG_05_0003043_tree ,
OG_06_0004939 (SeedPlants) Phylogenetic Tree(s): OG_06_0004939_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g081960.3.1
Cluster	HCCA: Cluster_202

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00096200	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.U2-type-intron-specific...	0.04	Archaeplastida
AT1G14650	No alias	SWAP (Suppressor-of-White-APricot)/surp...	0.07	Archaeplastida
Cpa\|evm.model.tig00021501.12	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	Archaeplastida
Cre06.g307450	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.07	Archaeplastida
GSVIVT01012058001	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	Archaeplastida
Gb_03741	No alias	component SF3A1 of splicing factor 3A complex	0.1	Archaeplastida
Gb_32888	No alias	component SF3A1 of splicing factor 3A complex	0.05	Archaeplastida
LOC_Os02g14780.2	No alias	component SF3A1 of splicing factor 3A complex	0.03	Archaeplastida
MA_10432431g0010	No alias	component SF3A1 of splicing factor 3A complex	0.03	Archaeplastida
Mp6g07670.1	No alias	component SF3A1 of splicing factor 3A complex	0.04	Archaeplastida
Pp3c18_11660V3.1	No alias	SWAP (Suppressor-of-White-APricot)/surp...	0.03	Archaeplastida
Pp3c23_15260V3.1	No alias	SWAP (Suppressor-of-White-APricot)/surp...	0.02	Archaeplastida
Zm00001e017307_P001	No alias	component SF3A1 of splicing factor 3A complex	0.08	Archaeplastida
Zm00001e025538_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
CC	GO:0000176	nuclear exosome (RNase complex)	IEP	Neighborhood
CC	GO:0000178	exosome (RNase complex)	IEP	Neighborhood
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
CC	GO:0005667	transcription factor complex	IEP	Neighborhood
CC	GO:0005669	transcription factor TFIID complex	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
CC	GO:0031011	Ino80 complex	IEP	Neighborhood
BP	GO:0031123	RNA 3'-end processing	IEP	Neighborhood
BP	GO:0031124	mRNA 3'-end processing	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
CC	GO:0033202	DNA helicase complex	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
CC	GO:0044454	nuclear chromosome part	IEP	Neighborhood
CC	GO:0044798	nuclear transcription factor complex	IEP	Neighborhood
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	Neighborhood
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Neighborhood
CC	GO:0097346	INO80-type complex	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1904949	ATPase complex	IEP	Neighborhood
CC	GO:1905354	exoribonuclease complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin_dom	732	799
IPR022030	SF3A1	258	473
IPR000061	Surp	189	239
IPR000061	Surp	69	119

External Links

No external refs found!

Solyc02g081960.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation