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  5. Solyc02g082000.3.1

Solyc02g082000.3.1


Description : component RPS15 of SSU proteome


Gene families : OG0002089 (Archaeplastida) Phylogenetic Tree(s): OG0002089_tree ,
OG_05_0002523 (LandPlants) Phylogenetic Tree(s): OG_05_0002523_tree ,
OG_06_0002663 (SeedPlants) Phylogenetic Tree(s): OG_06_0002663_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g082000.3.1
Cluster HCCA: Cluster_251

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00076070 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
AT1G04270 RPS15 cytosolic ribosomal protein S15 0.52 Archaeplastida
AT5G09510 No alias Ribosomal protein S19 family protein 0.32 Archaeplastida
Cpa|evm.model.tig00020830.61 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.3 Archaeplastida
Cre08.g360900 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.46 Archaeplastida
GSVIVT01000754001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.31 Archaeplastida
GSVIVT01018113001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.4 Archaeplastida
Gb_16516 No alias component RPS15 of SSU proteome 0.19 Archaeplastida
Gb_36524 No alias component RPS15 of SSU proteome 0.19 Archaeplastida
LOC_Os03g58430.1 No alias component RPS15 of SSU proteome 0.46 Archaeplastida
LOC_Os07g08660.1 No alias component RPS15 of SSU proteome 0.45 Archaeplastida
MA_14543g0010 No alias component RPS15 of SSU proteome 0.24 Archaeplastida
MA_18691g0010 No alias 40S ribosomal protein S15 OS=Picea mariana... 0.16 Archaeplastida
Mp3g15000.1 No alias component RPS15 of SSU proteome 0.51 Archaeplastida
Pp3c12_9180V3.1 No alias Ribosomal protein S19 family protein 0.46 Archaeplastida
Pp3c13_19770V3.1 No alias Ribosomal protein S19 family protein 0.03 Archaeplastida
Pp3c3_23700V3.1 No alias Ribosomal protein S19 family protein 0.27 Archaeplastida
Pp3c4_15250V3.1 No alias Ribosomal protein S19 family protein 0.28 Archaeplastida
Smo172403 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 Archaeplastida
Zm00001e011449_P001 No alias component RPS15 of SSU proteome 0.4 Archaeplastida
Zm00001e011450_P001 No alias component RPS15 of SSU proteome 0.24 Archaeplastida
Zm00001e032961_P001 No alias component RPS15 of SSU proteome 0.17 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
InterPro domains Description Start Stop
IPR002222 Ribosomal_S19 49 134
No external refs found!