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  5. Solyc02g085650.4.1

Solyc02g085650.4.1


Description : Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana (sp|q9m065|pp352_arath : 466.0) & Enzyme classification.EC_3 hydrolases.EC_3.4 hydrolase acting on peptide bond (peptidase)(50.3.4 : 244.2)


Gene families : OG0004280 (Archaeplastida) Phylogenetic Tree(s): OG0004280_tree ,
OG_05_0002954 (LandPlants) Phylogenetic Tree(s): OG_05_0002954_tree ,
OG_06_0000415 (SeedPlants) Phylogenetic Tree(s): OG_06_0000415_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g085650.4.1
Cluster HCCA: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00105510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.03 Archaeplastida
AT2G18520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
LOC_Os02g42210.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.03 Archaeplastida
Zm00001e015190_P001 No alias Pentatricopeptide repeat-containing protein At2g18520,... 0.03 Archaeplastida
Zm00001e019591_P001 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR032416 Peptidase_M24_C 585 644
IPR002885 Pentatricopeptide_repeat 208 248
IPR002885 Pentatricopeptide_repeat 275 323
IPR002885 Pentatricopeptide_repeat 106 132
IPR002885 Pentatricopeptide_repeat 138 163
IPR002885 Pentatricopeptide_repeat 174 203
IPR000994 Pept_M24 508 573
IPR000994 Pept_M24 425 490
No external refs found!