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  5. Solyc02g088100.3.1

Solyc02g088100.3.1


Description : alpha-class expansin


Gene families : OG0000024 (Archaeplastida) Phylogenetic Tree(s): OG0000024_tree ,
OG_05_0000028 (LandPlants) Phylogenetic Tree(s): OG_05_0000028_tree ,
OG_06_0000041 (SeedPlants) Phylogenetic Tree(s): OG_06_0000041_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g088100.3.1
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00270650 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.06 Archaeplastida
AMTR_s00012p00230920 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
AMTR_s00072p00134750 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
AMTR_s00077p00063420 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
AMTR_s00119p00058870 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
AMTR_s00140p00077570 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
AMTR_s00168p00074090 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT1G12560 ATEXP7, EXPA7,... expansin A7 0.04 Archaeplastida
AT1G20190 ATEXPA11, ATHEXP... expansin 11 0.03 Archaeplastida
AT1G26770 ATEXPA10,... expansin A10 0.03 Archaeplastida
AT1G62980 EXPA18, EXP18,... expansin A18 0.04 Archaeplastida
AT1G69530 ATEXPA1, EXP1,... expansin A1 0.03 Archaeplastida
AT2G28950 EXPA6, ATEXP6,... expansin A6 0.04 Archaeplastida
AT2G37640 ATEXPA3, EXP3,... Barwin-like endoglucanases superfamily protein 0.07 Archaeplastida
AT2G40610 EXPA8, ATHEXP... expansin A8 0.06 Archaeplastida
AT3G29030 EXP5, ATHEXP... expansin A5 0.03 Archaeplastida
AT4G01630 ATHEXP ALPHA... expansin A17 0.04 Archaeplastida
AT5G02260 EXP9, EXPA9,... expansin A9 0.05 Archaeplastida
AT5G39270 EXPA22, ATEXP22,... expansin A22 0.04 Archaeplastida
AT5G39290 ATEXP26, ATHEXP... expansin A26 0.03 Archaeplastida
AT5G56320 ATEXP14, EXPA14,... expansin A14 0.07 Archaeplastida
GSVIVT01008762001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.05 Archaeplastida
GSVIVT01011437001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01014362001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01028474001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.06 Archaeplastida
GSVIVT01029411001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.05 Archaeplastida
GSVIVT01032681001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01033691001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01035233001 No alias Expansin-A13 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_01048 No alias alpha-class expansin 0.08 Archaeplastida
Gb_01500 No alias alpha-class expansin 0.03 Archaeplastida
Gb_01502 No alias alpha-class expansin 0.03 Archaeplastida
Gb_01505 No alias alpha-class expansin 0.04 Archaeplastida
Gb_01506 No alias Expansin-A8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_01958 No alias alpha-class expansin 0.03 Archaeplastida
Gb_04404 No alias alpha-class expansin 0.02 Archaeplastida
Gb_06127 No alias alpha-class expansin 0.04 Archaeplastida
Gb_09118 No alias alpha-class expansin 0.03 Archaeplastida
Gb_20678 No alias alpha-class expansin 0.11 Archaeplastida
LOC_Os01g14660.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os01g16770.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os02g16730.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os02g16839.1 No alias alpha-class expansin 0.02 Archaeplastida
LOC_Os02g51040.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os03g06000.1 No alias alpha-class expansin 0.06 Archaeplastida
LOC_Os03g06010.1 No alias alpha-class expansin 0.02 Archaeplastida
LOC_Os03g06020.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os03g06050.1 No alias alpha-class expansin 0.02 Archaeplastida
LOC_Os03g21820.1 No alias alpha-class expansin 0.06 Archaeplastida
LOC_Os03g31480.1 No alias alpha-class expansin 0.02 Archaeplastida
LOC_Os03g60720.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os04g15840.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os05g19600.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os05g39990.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os06g01920.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os06g50400.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os08g44790.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os10g30340.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os10g39110.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os12g36040.1 No alias alpha-class expansin 0.03 Archaeplastida
MA_10020g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_100868g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_104065g0020 No alias alpha-class expansin 0.04 Archaeplastida
MA_10425823g0010 No alias alpha-class expansin 0.02 Archaeplastida
MA_10429288g0020 No alias Expansin-A2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_130258g0010 No alias alpha-class expansin 0.07 Archaeplastida
MA_14588g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_18265g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_274624g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_275115g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_30127g0010 No alias alpha-class expansin 0.05 Archaeplastida
MA_36587g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_37884g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_40671g0010 No alias alpha-class expansin 0.02 Archaeplastida
MA_45587g0020 No alias alpha-class expansin 0.08 Archaeplastida
MA_474624g0010 No alias alpha-class expansin 0.02 Archaeplastida
MA_4979g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_6644365g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_70880g0010 No alias alpha-class expansin 0.05 Archaeplastida
MA_7218g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_91602g0010 No alias Expansin-A2 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Mp1g22730.1 No alias alpha-class expansin 0.04 Archaeplastida
Mp1g22740.1 No alias alpha-class expansin 0.05 Archaeplastida
Mp1g24230.1 No alias alpha-class expansin 0.05 Archaeplastida
Mp1g26350.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp2g18600.1 No alias alpha-class expansin 0.04 Archaeplastida
Mp2g18610.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp3g06900.1 No alias alpha-class expansin 0.04 Archaeplastida
Mp3g22690.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp3g24470.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp5g01930.1 No alias alpha-class expansin 0.04 Archaeplastida
Mp5g20420.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp5g20430.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp8g18860.1 No alias alpha-class expansin 0.03 Archaeplastida
Pp3c11_12000V3.1 No alias expansin A14 0.02 Archaeplastida
Pp3c12_4560V3.1 No alias expansin A9 0.04 Archaeplastida
Pp3c13_20360V3.1 No alias expansin A9 0.04 Archaeplastida
Pp3c13_8440V3.1 No alias expansin A9 0.02 Archaeplastida
Pp3c14_18030V3.1 No alias expansin A14 0.02 Archaeplastida
Pp3c14_18450V3.1 No alias expansin A14 0.02 Archaeplastida
Pp3c18_19720V3.1 No alias expansin A1 0.1 Archaeplastida
Pp3c20_5780V3.1 No alias expansin A15 0.07 Archaeplastida
Pp3c21_1850V3.1 No alias expansin A1 0.05 Archaeplastida
Pp3c21_1940V3.1 No alias expansin A9 0.03 Archaeplastida
Pp3c22_760V3.1 No alias expansin A1 0.03 Archaeplastida
Pp3c24_15400V3.1 No alias expansin A15 0.04 Archaeplastida
Pp3c3_16280V3.1 No alias expansin A14 0.03 Archaeplastida
Pp3c7_12870V3.1 No alias expansin A14 0.02 Archaeplastida
Pp3c8_14900V3.1 No alias expansin A14 0.04 Archaeplastida
Pp3c8_870V3.1 No alias expansin A1 0.02 Archaeplastida
Smo102623 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
Smo143857 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
Smo230202 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.05 Archaeplastida
Smo231226 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
Smo409954 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.05 Archaeplastida
Smo75237 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
Smo90935 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.05 Archaeplastida
Smo91129 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.05 Archaeplastida
Solyc02g081210.3.1 No alias alpha-class expansin 0.02 Archaeplastida
Solyc04g081870.4.1 No alias alpha-class expansin 0.05 Archaeplastida
Solyc06g076220.3.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc08g007780.3.1 No alias Putative expansin-A30 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Solyc09g010860.4.1 No alias alpha-class expansin 0.06 Archaeplastida
Solyc10g084780.3.1 No alias alpha-class expansin 0.04 Archaeplastida
Zm00001e000429_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e003887_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e003888_P001 No alias alpha-class expansin 0.05 Archaeplastida
Zm00001e003889_P001 No alias alpha-class expansin 0.05 Archaeplastida
Zm00001e004714_P001 No alias alpha-class expansin 0.05 Archaeplastida
Zm00001e004720_P001 No alias alpha-class expansin 0.04 Archaeplastida
Zm00001e004721_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e011741_P001 No alias alpha-class expansin 0.04 Archaeplastida
Zm00001e014220_P001 No alias alpha-class expansin 0.05 Archaeplastida
Zm00001e014221_P001 No alias Expansin-A22 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
Zm00001e014231_P001 No alias Expansin-A13 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e014247_P001 No alias Expansin-A23 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e017334_P001 No alias alpha-class expansin 0.05 Archaeplastida
Zm00001e029218_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e037578_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e038997_P001 No alias alpha-class expansin 0.05 Archaeplastida
Zm00001e040578_P001 No alias alpha-class expansin 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004478 methionine adenosyltransferase activity IEP Neighborhood
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
BP GO:0046500 S-adenosylmethionine metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 59 136
IPR007117 Expansin_CBD 147 224
No external refs found!