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  5. Solyc02g088670.1.1

Solyc02g088670.1.1


Description : C2H2 zinc finger transcription factor


Gene families : OG0000103 (Archaeplastida) Phylogenetic Tree(s): OG0000103_tree ,
OG_05_0000039 (LandPlants) Phylogenetic Tree(s): OG_05_0000039_tree ,
OG_06_0000107 (SeedPlants) Phylogenetic Tree(s): OG_06_0000107_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g088670.1.1
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AT2G28710 No alias C2H2-type zinc finger family protein 0.02 Archaeplastida
AT4G16610 No alias C2H2-like zinc finger protein 0.02 Archaeplastida
AT5G03510 No alias C2H2-type zinc finger family protein 0.02 Archaeplastida
GSVIVT01037364001 No alias Zinc finger protein ZAT2 OS=Arabidopsis thaliana 0.06 Archaeplastida
Gb_06483 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Gb_06484 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Gb_10419 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Gb_10423 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Gb_16419 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Gb_40019 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os01g62130.1 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
LOC_Os02g44120.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os03g17150.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os03g32220.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os05g02390.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os08g20580.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os10g40660.1 No alias C2H2 zinc finger transcription factor 0.1 Archaeplastida
MA_85675g0010 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Solyc06g060740.3.1 No alias C2H2 zinc finger transcription factor 0.01 Archaeplastida
Zm00001e001253_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e002022_P001 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e002344_P001 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
Zm00001e024331_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e028784_P001 No alias C2H2 zinc finger transcription factor 0.01 Archaeplastida
Zm00001e038464_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e041518_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!