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  5. Solyc02g089410.3.1

Solyc02g089410.3.1


Description : E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum (sp|p0ch30|ring1_goshi : 102.0)


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0000046 (LandPlants) Phylogenetic Tree(s): OG_05_0000046_tree ,
OG_06_0003160 (SeedPlants) Phylogenetic Tree(s): OG_06_0003160_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g089410.3.1
Cluster HCCA: Cluster_250

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00263520 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AT3G60080 No alias RING/U-box superfamily protein 0.12 Archaeplastida
AT5G64920 CIP8 COP1-interacting protein 8 0.08 Archaeplastida
Cpa|evm.model.tig00000571.7 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
LOC_Os02g55480.1 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_19897g0010 No alias E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_8499g0020 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Smo18753 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Zm00001e027319_P001 No alias E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 258 300
No external refs found!