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  5. Solyc02g089800.3.1

Solyc02g089800.3.1


Description : CRWN nuclear lamina lamin-like protein


Gene families : OG0002164 (Archaeplastida) Phylogenetic Tree(s): OG0002164_tree ,
OG_05_0001522 (LandPlants) Phylogenetic Tree(s): OG_05_0001522_tree ,
OG_06_0001206 (SeedPlants) Phylogenetic Tree(s): OG_06_0001206_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g089800.3.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00252300 evm_27.TU.AmTr_v1... Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.03 Archaeplastida
AMTR_s00044p00204550 evm_27.TU.AmTr_v1... Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.04 Archaeplastida
AT1G13220 LINC2 nuclear matrix constituent protein-related 0.03 Archaeplastida
AT1G67230 LINC1 little nuclei1 0.03 Archaeplastida
AT1G68790 LINC3 little nuclei3 0.11 Archaeplastida
AT5G65770 LINC4 little nuclei4 0.06 Archaeplastida
AT5G65780 ATBCAT-5 branched-chain amino acid aminotransferase 5 /... 0.07 Archaeplastida
GSVIVT01011972001 No alias Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.05 Archaeplastida
GSVIVT01031076001 No alias Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.08 Archaeplastida
Gb_03736 No alias CRWN nuclear lamina lamin-like protein 0.05 Archaeplastida
Gb_20952 No alias CRWN nuclear lamina lamin-like protein 0.03 Archaeplastida
LOC_Os01g56140.1 No alias CRWN nuclear lamina lamin-like protein 0.09 Archaeplastida
LOC_Os02g48010.1 No alias CRWN nuclear lamina lamin-like protein 0.11 Archaeplastida
Mp3g21160.1 No alias CRWN nuclear lamina lamin-like protein 0.04 Archaeplastida
Zm00001e019705_P002 No alias CRWN nuclear lamina lamin-like protein 0.06 Archaeplastida
Zm00001e023357_P001 No alias CRWN nuclear lamina lamin-like protein 0.12 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!