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  5. Solyc02g093340.3.1

Solyc02g093340.3.1


Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 147.0)


Gene families : OG0000233 (Archaeplastida) Phylogenetic Tree(s): OG0000233_tree ,
OG_05_0001171 (LandPlants) Phylogenetic Tree(s): OG_05_0001171_tree ,
OG_06_0001131 (SeedPlants) Phylogenetic Tree(s): OG_06_0001131_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g093340.3.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.06 Archaeplastida
AMTR_s00061p00188860 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00065p00083440 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.09 Archaeplastida
AT2G33410 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 Archaeplastida
AT5G40490 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 Archaeplastida
Gb_29426 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida
Gb_29428 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.07 Archaeplastida
Gb_32677 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 Archaeplastida
Gb_33012 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os02g12850.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os10g33230.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 Archaeplastida
MA_10432683g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.07 Archaeplastida
MA_125759g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.08 Archaeplastida
MA_141102g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.06 Archaeplastida
MA_473g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida
MA_68291g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 Archaeplastida
MA_79622g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 Archaeplastida
Pp3c1_33540V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Pp3c2_9350V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Solyc09g090520.3.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e004612_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e011415_P001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e014461_P003 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e024934_P002 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.09 Archaeplastida
Zm00001e030652_P001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e037155_P004 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
CC GO:0017053 transcriptional repressor complex IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 139 208
IPR000504 RRM_dom 50 117
No external refs found!