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  5. Solyc02g093460.4.1

Solyc02g093460.4.1


Description : tRNA pseudouridine synthase (TruB)


Gene families : OG0002290 (Archaeplastida) Phylogenetic Tree(s): OG0002290_tree ,
OG_05_0004282 (LandPlants) Phylogenetic Tree(s): OG_05_0004282_tree ,
OG_06_0004183 (SeedPlants) Phylogenetic Tree(s): OG_06_0004183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g093460.4.1
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00225390 evm_27.TU.AmTr_v1... RNA processing.RNA... 0.03 Archaeplastida
AT5G14460 No alias Pseudouridine synthase family protein 0.13 Archaeplastida
Cpa|evm.model.tig00000197.10 No alias No description available 0.01 Archaeplastida
GSVIVT01032383001 No alias RNA processing.RNA... 0.06 Archaeplastida
LOC_Os05g01750.1 No alias tRNA pseudouridine synthase (TruB) 0.08 Archaeplastida
MA_120184g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c2_21370V3.1 No alias Pseudouridine synthase family protein 0.01 Archaeplastida
Smo75554 No alias RNA processing.RNA... 0.06 Archaeplastida
Zm00001e029672_P001 No alias tRNA pseudouridine synthase (TruB) 0.06 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004133 glycogen debranching enzyme activity IEP Neighborhood
MF GO:0004134 4-alpha-glucanotransferase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Neighborhood
MF GO:0004655 porphobilinogen synthase activity IEP Neighborhood
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006788 heme oxidation IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042168 heme metabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002501 PsdUridine_synth_N 341 491
IPR032819 TruB_C 492 535
No external refs found!