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  5. Solyc02g093580.4.1

Solyc02g093580.4.1


Description : pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g093580.4.1
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00189000 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
AMTR_s00120p00111300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AT1G11920 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT1G14420 AT59 Pectate lyase family protein 0.04 Archaeplastida
AT1G67750 No alias Pectate lyase family protein 0.03 Archaeplastida
AT2G02720 No alias Pectate lyase family protein 0.03 Archaeplastida
AT3G07010 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
AT3G24230 No alias Pectate lyase family protein 0.03 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT4G13710 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT4G22080 RHS14 root hair specific 14 0.03 Archaeplastida
AT5G04310 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT5G15110 No alias Pectate lyase family protein 0.03 Archaeplastida
AT5G48900 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
AT5G55720 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
AT5G63180 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
GSVIVT01000592001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01007582001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.06 Archaeplastida
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.01 Archaeplastida
GSVIVT01020067001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.06 Archaeplastida
GSVIVT01020068001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.06 Archaeplastida
GSVIVT01024239001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01028548001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01029048001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
Gb_02248 No alias pectate lyase 0.03 Archaeplastida
LOC_Os02g12300.1 No alias pectate lyase 0.03 Archaeplastida
LOC_Os04g05050.1 No alias pectate lyase 0.08 Archaeplastida
LOC_Os06g05209.1 No alias pectate lyase 0.04 Archaeplastida
LOC_Os06g05260.1 No alias pectate lyase 0.04 Archaeplastida
LOC_Os06g38510.2 No alias pectate lyase 0.04 Archaeplastida
MA_101171g0010 No alias pectate lyase 0.06 Archaeplastida
MA_10205415g0010 No alias pectate lyase 0.04 Archaeplastida
MA_10353668g0010 No alias pectate lyase 0.03 Archaeplastida
MA_10426822g0020 No alias pectate lyase 0.06 Archaeplastida
MA_10430145g0030 No alias pectate lyase 0.04 Archaeplastida
MA_10437227g0010 No alias pectate lyase 0.02 Archaeplastida
MA_10437227g0030 No alias pectate lyase 0.03 Archaeplastida
MA_1164682g0010 No alias pectate lyase 0.02 Archaeplastida
MA_170547g0010 No alias pectate lyase 0.04 Archaeplastida
MA_203992g0010 No alias pectate lyase 0.03 Archaeplastida
MA_204440g0010 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.03 Archaeplastida
MA_474372g0010 No alias pectate lyase 0.01 Archaeplastida
MA_476625g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_52869g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_66914g0010 No alias pectate lyase 0.04 Archaeplastida
MA_91467g0010 No alias pectate lyase 0.02 Archaeplastida
MA_91467g0020 No alias pectate lyase 0.05 Archaeplastida
MA_956526g0010 No alias pectate lyase 0.02 Archaeplastida
MA_97947g0010 No alias pectate lyase 0.05 Archaeplastida
Mp8g10190.1 No alias pectate lyase 0.02 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c17_16370V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_10470V3.1 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
Pp3c1_4040V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_20320V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
Solyc03g111690.4.1 No alias pectate lyase 0.05 Archaeplastida
Solyc05g055510.3.1 No alias pectate lyase 0.03 Archaeplastida
Solyc06g071840.3.1 No alias Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc06g083580.4.1 No alias pectate lyase 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Neighborhood
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
BP GO:0006751 glutathione catabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009894 regulation of catabolic process IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016842 amidine-lyase activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
BP GO:0042176 regulation of protein catabolic process IEP Neighborhood
BP GO:0042219 cellular modified amino acid catabolic process IEP Neighborhood
BP GO:0043171 peptide catabolic process IEP Neighborhood
BP GO:0044273 sulfur compound catabolic process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
CC GO:1905369 endopeptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 134 319
No external refs found!