AMTR_s00023p00181320 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00023.118

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.WOX transcription factor

Gene families : OG0000425 (Archaeplastida) Phylogenetic Tree(s): OG0000425_tree ,
OG_05_0000212 (LandPlants) Phylogenetic Tree(s): OG_05_0000212_tree ,
OG_06_0000309 (SeedPlants) Phylogenetic Tree(s): OG_06_0000309_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00023p00181320
Cluster	HCCA: Cluster_96

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00119p00100440	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
AT1G46480	WOX4	WUSCHEL related homeobox 4	0.03	Archaeplastida
AT2G17950	WUS, PGA6, WUS1	Homeodomain-like superfamily protein	0.04	Archaeplastida
AT2G28610	WOX3, PRS1, PRS	Homeodomain-like superfamily protein	0.04	Archaeplastida
AT3G03660	WOX11	WUSCHEL related homeobox 11	0.05	Archaeplastida
AT3G11260	WOX5	WUSCHEL related homeobox 5	0.03	Archaeplastida
GSVIVT01009453001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.05	Archaeplastida
GSVIVT01016360001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
GSVIVT01018787001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
GSVIVT01025075001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
GSVIVT01029942001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.05	Archaeplastida
LOC_Os05g02730.1	No alias	transcription factor (WOX)	0.03	Archaeplastida
LOC_Os05g48990.1	No alias	transcription factor (WOX)	0.03	Archaeplastida
LOC_Os07g48560.1	No alias	transcription factor (WOX)	0.04	Archaeplastida
MA_10234279g0010	No alias	transcription factor (WOX)	0.04	Archaeplastida
MA_10344604g0010	No alias	transcription factor (WOX)	0.02	Archaeplastida
MA_121643g0010	No alias	transcription factor (WOX)	0.02	Archaeplastida
MA_129591g0010	No alias	transcription factor (WOX)	0.04	Archaeplastida
MA_1910g0010	No alias	transcription factor (WOX)	0.02	Archaeplastida
MA_33318g0010	No alias	transcription factor (WOX)	0.03	Archaeplastida
MA_8832398g0010	No alias	transcription factor (WOX)	0.04	Archaeplastida
MA_8850184g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_921642g0010	No alias	transcription factor (WOX)	0.03	Archaeplastida
Solyc02g077390.2.1	No alias	transcription factor (WOX)	0.04	Archaeplastida
Solyc02g083950.3.1	No alias	transcription factor (WOX)	0.04	Archaeplastida
Solyc11g072790.2.1	No alias	transcription factor (WOX)	0.02	Archaeplastida
Zm00001e001527_P001	No alias	transcription factor (WOX)	0.03	Archaeplastida
Zm00001e006644_P002	No alias	transcription factor (WOX)	0.03	Archaeplastida
Zm00001e009121_P001	No alias	transcription factor (WOX)	0.04	Archaeplastida
Zm00001e024169_P001	No alias	transcription factor (WOX)	0.05	Archaeplastida
Zm00001e029534_P001	No alias	transcription factor (WOX)	0.03	Archaeplastida
Zm00001e032433_P003	No alias	transcription factor (WOX)	0.03	Archaeplastida
Zm00001e035891_P001	No alias	transcription factor (WOX)	0.02	Archaeplastida
Zm00001e038272_P001	No alias	transcription factor (WOX)	0.03	Archaeplastida
Zm00001e041785_P001	No alias	transcription factor (WOX)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006835	dicarboxylic acid transport	IEP	Neighborhood
BP	GO:0015711	organic anion transport	IEP	Neighborhood
BP	GO:0015740	C4-dicarboxylate transport	IEP	Neighborhood
BP	GO:0015743	malate transport	IEP	Neighborhood
BP	GO:0015849	organic acid transport	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	IEP	Neighborhood
BP	GO:0046942	carboxylic acid transport	IEP	Neighborhood
MF	GO:0051213	dioxygenase activity	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	7	66

External Links

No external refs found!

AMTR_s00023p00181320 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation