Solyc03g005680.3.1

Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 252.0)

Gene families : OG0000233 (Archaeplastida) Phylogenetic Tree(s): OG0000233_tree ,
OG_05_0000415 (LandPlants) Phylogenetic Tree(s): OG_05_0000415_tree ,
OG_06_0000490 (SeedPlants) Phylogenetic Tree(s): OG_06_0000490_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g005680.3.1
Cluster	HCCA: Cluster_131

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00049p00200350	evm_27.TU.AmTr_v1...	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.05	Archaeplastida
AMTR_s00061p00188860	evm_27.TU.AmTr_v1...	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.03	Archaeplastida
AMTR_s00067p00185510	evm_27.TU.AmTr_v1...	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.07	Archaeplastida
AT1G58470	RBP1, ATRBP1	RNA-binding protein 1	0.03	Archaeplastida
Cpa\|evm.model.tig00020912.27	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.01	Archaeplastida
GSVIVT01014729001	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01028394001	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01032402001	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.03	Archaeplastida
Gb_29426	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.04	Archaeplastida
Gb_29428	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.03	Archaeplastida
Gb_35079	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os02g12850.1	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os10g33230.1	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.05	Archaeplastida
MA_10432683g0010	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.06	Archaeplastida
MA_125759g0010	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.04	Archaeplastida
MA_141102g0010	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.02	Archaeplastida
MA_473g0010	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.02	Archaeplastida
MA_79622g0010	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.03	Archaeplastida
Pp3c26_10420V3.1	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.04	Archaeplastida
Pp3c26_4470V3.1	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.04	Archaeplastida
Pp3c2_9200V3.1	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.04	Archaeplastida
Pp3c4_17440V3.1	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.04	Archaeplastida
Smo4662	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.04	Archaeplastida
Solyc09g090520.3.1	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e004612_P001	No alias	no hits & (original description: none)	0.12	Archaeplastida
Zm00001e012709_P005	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.07	Archaeplastida
Zm00001e014461_P003	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.05	Archaeplastida
Zm00001e024336_P003	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e024934_P002	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.08	Archaeplastida
Zm00001e030652_P001	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.11	Archaeplastida
Zm00001e037155_P004	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.08	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000123	histone acetyltransferase complex	IEP	Neighborhood
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006334	nucleosome assembly	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
MF	GO:0008170	N-methyltransferase activity	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
MF	GO:0008276	protein methyltransferase activity	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
CC	GO:0031248	protein acetyltransferase complex	IEP	Neighborhood
MF	GO:0031369	translation initiation factor binding	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0034728	nucleosome organization	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0065004	protein-DNA complex assembly	IEP	Neighborhood
CC	GO:0070461	SAGA-type complex	IEP	Neighborhood
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Neighborhood
CC	GO:1902493	acetyltransferase complex	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	8	75
IPR000504	RRM_dom	111	169

External Links

No external refs found!

Solyc03g005680.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation