Solyc03g005860.4.1

Description : subfamily ABCB transporter

Gene families : OG0000057 (Archaeplastida) Phylogenetic Tree(s): OG0000057_tree ,
OG_05_0000418 (LandPlants) Phylogenetic Tree(s): OG_05_0000418_tree ,
OG_06_0000295 (SeedPlants) Phylogenetic Tree(s): OG_06_0000295_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g005860.4.1
Cluster	HCCA: Cluster_39

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00263610	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AMTR_s00010p00254310	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
AMTR_s00055p00102180	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
AMTR_s00056p00132920	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
AMTR_s00090p00165440	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AT1G02530	PGP12	P-glycoprotein 12	0.03	Archaeplastida
AT1G28010	ABCB14, ATABCB14, PGP14	P-glycoprotein 14	0.02	Archaeplastida
AT3G28345	No alias	ABC transporter family protein	0.04	Archaeplastida
AT4G01820	PGP3, MDR3	P-glycoprotein 3	0.03	Archaeplastida
AT4G25960	PGP2	P-glycoprotein 2	0.07	Archaeplastida
AT5G46540	PGP7	P-glycoprotein 7	0.04	Archaeplastida
GSVIVT01000580001	No alias	ABC transporter B family member 15 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01007586001	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
GSVIVT01013125001	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
GSVIVT01015306001	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
GSVIVT01016706001	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
GSVIVT01017696001	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
GSVIVT01021365001	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
GSVIVT01032578001	No alias	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
Gb_02468	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_02469	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Gb_07563	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_08614	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Gb_10211	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_27347	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_32125	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Gb_33057	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Gb_33058	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_36497	No alias	subfamily ABCB transporter	0.03	Archaeplastida
LOC_Os01g50160.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
LOC_Os02g09720.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
LOC_Os02g46680.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
LOC_Os05g04610.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
LOC_Os05g47500.1	No alias	subfamily ABCB transporter	0.01	Archaeplastida
MA_10432922g0010	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_111099g0010	No alias	subfamily ABCB transporter	0.05	Archaeplastida
MA_126766g0010	No alias	subfamily ABCB transporter	0.04	Archaeplastida
MA_6870g0010	No alias	subfamily ABCB transporter	0.05	Archaeplastida
MA_83806g0010	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_934204g0010	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Mp1g26440.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Mp7g04390.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Pp3c1_31680V3.1	No alias	ABC transporter family protein	0.01	Archaeplastida
Pp3c1_34680V3.1	No alias	P-glycoprotein 10	0.04	Archaeplastida
Pp3c1_7210V3.1	No alias	ATP binding cassette subfamily B19	0.02	Archaeplastida
Pp3c6_7260V3.1	No alias	ATP binding cassette subfamily B19	0.02	Archaeplastida
Smo148837	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
Smo230688	No alias	Solute transport.primary active transport.ABC...	0.05	Archaeplastida
Smo408755	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
Smo410515	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
Smo84555	No alias	Solute transport.primary active transport.ABC...	0.01	Archaeplastida
Solyc02g071340.2.1	No alias	subfamily ABCB transporter	0.01	Archaeplastida
Solyc06g009280.1.1	No alias	subfamily ABCB transporter	0.08	Archaeplastida
Solyc06g009290.4.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Solyc11g067300.2.1	No alias	subfamily ABCB transporter	0.07	Archaeplastida
Solyc11g067310.3.1	No alias	no hits & (original description: none)	0.11	Archaeplastida
Zm00001e023274_P001	No alias	subfamily ABCB transporter	0.07	Archaeplastida
Zm00001e028117_P001	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Zm00001e041087_P002	No alias	subfamily ABCB transporter	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Neighborhood
MF	GO:0003860	3-hydroxyisobutyryl-CoA hydrolase activity	IEP	Neighborhood
MF	GO:0005102	signaling receptor binding	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006952	defense response	IEP	Neighborhood
MF	GO:0008083	growth factor activity	IEP	Neighborhood
MF	GO:0008146	sulfotransferase activity	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008234	cysteine-type peptidase activity	IEP	Neighborhood
BP	GO:0008283	cell proliferation	IEP	Neighborhood
MF	GO:0010333	terpene synthase activity	IEP	Neighborhood
MF	GO:0016289	CoA hydrolase activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0016782	transferase activity, transferring sulfur-containing groups	IEP	Neighborhood
MF	GO:0016829	lyase activity	IEP	Neighborhood
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Neighborhood
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0030545	receptor regulator activity	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
MF	GO:0048018	receptor ligand activity	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	368	515
IPR011527	ABC1_TM_dom	694	964
IPR011527	ABC1_TM_dom	26	297
IPR003439	ABC_transporter-like	1035	1184

External Links

No external refs found!

Solyc03g005860.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation