Solyc03g006830.3.1

Description : transcription factor (MADS/AGL)

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g006830.3.1
Cluster	HCCA: Cluster_157

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00218870	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00021p00254030	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AMTR_s00089p00081270	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AT1G24260	AGL9, SEP3	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT3G02310	AGL4, SEP2	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
GSVIVT01015641001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01018446001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01036549001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
Gb_03068	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os02g06860.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os02g36924.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
LOC_Os03g03100.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
LOC_Os06g11330.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_10289256g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_133455g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_15122g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_175522g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_19007g0010	No alias	transcription factor (MADS/AGL)	0.08	Archaeplastida
MA_254338g0010	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
MA_333471g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_35712g0010	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
MA_57493g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_9284799g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_9841429g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc04g076280.4.1	No alias	MADS-box protein SVP OS=Arabidopsis thaliana...	0.04	Archaeplastida
Zm00001e019057_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e030187_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004519	endonuclease activity	IEP	Neighborhood
MF	GO:0004521	endoribonuclease activity	IEP	Neighborhood
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
MF	GO:0005048	signal sequence binding	IEP	Neighborhood
BP	GO:0006621	protein retention in ER lumen	IEP	Neighborhood
BP	GO:0006720	isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0006721	terpenoid metabolic process	IEP	Neighborhood
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Neighborhood
MF	GO:0008661	1-deoxy-D-xylulose-5-phosphate synthase activity	IEP	Neighborhood
BP	GO:0016114	terpenoid biosynthetic process	IEP	Neighborhood
MF	GO:0016744	transferase activity, transferring aldehyde or ketonic groups	IEP	Neighborhood
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
BP	GO:0032507	maintenance of protein location in cell	IEP	Neighborhood
MF	GO:0033218	amide binding	IEP	Neighborhood
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	Neighborhood
MF	GO:0042277	peptide binding	IEP	Neighborhood
MF	GO:0042393	histone binding	IEP	Neighborhood
BP	GO:0045185	maintenance of protein location	IEP	Neighborhood
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0046923	ER retention sequence binding	IEP	Neighborhood
BP	GO:0051235	maintenance of location	IEP	Neighborhood
BP	GO:0051651	maintenance of location in cell	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	87	173
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

Solyc03g006830.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation