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  5. Solyc03g007370.3.1

Solyc03g007370.3.1


Description : basal transcription factor (Sigma)


Gene families : OG0000365 (Archaeplastida) Phylogenetic Tree(s): OG0000365_tree ,
OG_05_0006432 (LandPlants) Phylogenetic Tree(s): OG_05_0006432_tree ,
OG_06_0007444 (SeedPlants) Phylogenetic Tree(s): OG_06_0007444_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g007370.3.1
Cluster HCCA: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00258380 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.04 Archaeplastida
AMTR_s00015p00252960 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.02 Archaeplastida
AMTR_s00056p00209700 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.02 Archaeplastida
AT1G64860 SIGB, SIG2,... sigma factor A 0.06 Archaeplastida
AT3G53920 SIGC, SIG3 RNApolymerase sigma-subunit C 0.04 Archaeplastida
AT5G24120 ATSIG5, SIG5, SIGE sigma factor E 0.12 Archaeplastida
Cre03.g194950 No alias RNA biosynthesis.organelle... 0.02 Archaeplastida
GSVIVT01028717001 No alias RNA biosynthesis.organelle... 0.06 Archaeplastida
Gb_40730 No alias basal transcription factor (Sigma) 0.04 Archaeplastida
LOC_Os05g50930.1 No alias basal transcription factor (Sigma) 0.04 Archaeplastida
LOC_Os08g06630.1 No alias basal transcription factor (Sigma) 0.05 Archaeplastida
MA_10362938g0010 No alias basal transcription factor (Sigma) 0.02 Archaeplastida
MA_10429585g0010 No alias basal transcription factor (Sigma) 0.03 Archaeplastida
Mp7g15030.1 No alias basal transcription factor (Sigma) 0.03 Archaeplastida
Pp3c22_18520V3.1 No alias sigma factor E 0.05 Archaeplastida
Pp3c2_5110V3.1 No alias RNApolymerase sigma subunit 2 0.02 Archaeplastida
Smo147096 No alias RNA biosynthesis.organelle... 0.07 Archaeplastida
Zm00001e011616_P008 No alias basal transcription factor (Sigma) 0.02 Archaeplastida
Zm00001e032596_P002 No alias basal transcription factor (Sigma) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016229 steroid dehydrogenase activity IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
InterPro domains Description Start Stop
IPR007624 RNA_pol_sigma70_r3 236 277
IPR007624 RNA_pol_sigma70_r3 366 433
IPR007627 RNA_pol_sigma70_r2 282 350
IPR007630 RNA_pol_sigma70_r4 451 504
No external refs found!