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  4. Sequence
  5. Solyc03g007410.4.1

Solyc03g007410.4.1


Description : transcription factor (bHLH)


Gene families : OG0000509 (Archaeplastida) Phylogenetic Tree(s): OG0000509_tree ,
OG_05_0000283 (LandPlants) Phylogenetic Tree(s): OG_05_0000283_tree ,
OG_06_0003516 (SeedPlants) Phylogenetic Tree(s): OG_06_0003516_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g007410.4.1
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00198780 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AMTR_s00015p00239460 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
AMTR_s00025p00081740 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.06 Archaeplastida
AT1G22490 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
AT3G24140 FMA basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
AT3G61950 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.07 Archaeplastida
GSVIVT01009097001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
GSVIVT01017892001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.1 Archaeplastida
GSVIVT01021074001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
GSVIVT01027446001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.05 Archaeplastida
GSVIVT01028719001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Gb_17233 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os02g46560.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os04g50090.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os08g37730.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os09g29360.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
LOC_Os10g23050.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
MA_120602g0010 No alias transcription factor (bHLH) 0.08 Archaeplastida
MA_141469g0010 No alias transcription factor (bHLH) 0.02 Archaeplastida
MA_194157g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_686524g0010 No alias transcription factor (bHLH) 0.08 Archaeplastida
Pp3c22_14220V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
Zm00001e000161_P002 No alias transcription factor (bHLH) 0.09 Archaeplastida
Zm00001e003394_P001 No alias transcription factor (bHLH) 0.05 Archaeplastida
Zm00001e009989_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e014279_P001 No alias transcription factor (bHLH) 0.05 Archaeplastida
Zm00001e015494_P002 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e023271_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e023838_P003 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e024824_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e026643_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e026696_P001 No alias transcription factor (bHLH) 0.05 Archaeplastida
Zm00001e037075_P001 No alias transcription factor (bHLH) 0.07 Archaeplastida
Zm00001e041403_P001 No alias transcription factor (bHLH) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048580 regulation of post-embryonic development IEP Neighborhood
BP GO:0048582 positive regulation of post-embryonic development IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051094 positive regulation of developmental process IEP Neighborhood
BP GO:0051239 regulation of multicellular organismal process IEP Neighborhood
BP GO:0051240 positive regulation of multicellular organismal process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:2000026 regulation of multicellular organismal development IEP Neighborhood
BP GO:2000038 regulation of stomatal complex development IEP Neighborhood
BP GO:2000123 positive regulation of stomatal complex development IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 98 148
No external refs found!