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  5. Solyc03g044000.1.1

Solyc03g044000.1.1


Description : component RPL26 of LSU proteome component


Gene families : OG0002117 (Archaeplastida) Phylogenetic Tree(s): OG0002117_tree ,
OG_05_0002108 (LandPlants) Phylogenetic Tree(s): OG_05_0002108_tree ,
OG_06_0002767 (SeedPlants) Phylogenetic Tree(s): OG_06_0002767_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g044000.1.1
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00214810 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
AMTR_s00065p00088770 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 Archaeplastida
AT3G49910 No alias Translation protein SH3-like family protein 0.26 Archaeplastida
AT5G67510 No alias Translation protein SH3-like family protein 0.23 Archaeplastida
Cpa|evm.model.tig00000144.60 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
Cre01.g040000 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.3 Archaeplastida
GSVIVT01000114001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
GSVIVT01030972001 No alias 60S ribosomal protein L26-1 OS=Arabidopsis thaliana 0.09 Archaeplastida
Gb_05675 No alias component RPL26 of LSU proteome component 0.23 Archaeplastida
Gb_06102 No alias component RPL26 of LSU proteome component 0.27 Archaeplastida
LOC_Os01g04730.1 No alias component RPL26 of LSU proteome component 0.06 Archaeplastida
LOC_Os11g05370.1 No alias component RPL26 of LSU proteome component 0.17 Archaeplastida
LOC_Os12g05430.1 No alias component RPL26 of LSU proteome component 0.21 Archaeplastida
MA_13141g0010 No alias component RPL26 of LSU proteome component 0.29 Archaeplastida
MA_158811g0010 No alias component RPL26 of LSU proteome component 0.17 Archaeplastida
MA_162587g0010 No alias component RPL26 of LSU proteome component 0.03 Archaeplastida
Mp2g12870.1 No alias component RPL26 of LSU proteome component 0.34 Archaeplastida
Pp3c10_11120V3.1 No alias Translation protein SH3-like family protein 0.28 Archaeplastida
Pp3c14_25170V3.1 No alias Translation protein SH3-like family protein 0.38 Archaeplastida
Pp3c1_25000V3.1 No alias Translation protein SH3-like family protein 0.35 Archaeplastida
Pp3c2_15910V3.1 No alias Translation protein SH3-like family protein 0.29 Archaeplastida
Pp3c4_17780V3.1 No alias Translation protein SH3-like family protein 0.28 Archaeplastida
Smo227399 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
Zm00001e016957_P001 No alias component RPL26 of LSU proteome component 0.09 Archaeplastida
Zm00001e025774_P001 No alias component RPL26 of LSU proteome component 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
CC GO:0015934 large ribosomal subunit IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
InterPro domains Description Start Stop
IPR005756 Ribosomal_L26/L24P_euk/arc 8 121
IPR005824 KOW 51 82
No external refs found!