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  5. Solyc03g046350.3.1

Solyc03g046350.3.1


Description : pre-40S ribosomal subunit assembly factor (RRP7)


Gene families : OG0006112 (Archaeplastida) Phylogenetic Tree(s): OG0006112_tree ,
OG_05_0008042 (LandPlants) Phylogenetic Tree(s): OG_05_0008042_tree ,
OG_06_0008839 (SeedPlants) Phylogenetic Tree(s): OG_06_0008839_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g046350.3.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AT5G38720 No alias unknown protein; Has 13419 Blast hits to 9093 proteins... 0.11 Archaeplastida
Cpa|evm.model.tig00000704.18 No alias No description available 0.03 Archaeplastida
GSVIVT01036491001 No alias No description available 0.05 Archaeplastida
Gb_30657 No alias pre-40S ribosomal subunit assembly factor (RRP7) 0.05 Archaeplastida
LOC_Os02g49620.1 No alias pre-40S ribosomal subunit assembly factor (RRP7) 0.05 Archaeplastida
MA_10434132g0020 No alias pre-40S ribosomal subunit assembly factor (RRP7) 0.02 Archaeplastida
Pp3c10_24110V3.1 No alias No annotation 0.04 Archaeplastida
Smo422020 No alias No description available 0.07 Archaeplastida
Zm00001e015713_P002 No alias pre-40S ribosomal subunit assembly factor (RRP7) 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
BP GO:0043486 histone exchange IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR024326 RRP7 159 282
No external refs found!