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  5. Solyc03g082980.3.1

Solyc03g082980.3.1


Description : RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana (sp|q8w4b1|rcf3_arath : 607.0)


Gene families : OG0000393 (Archaeplastida) Phylogenetic Tree(s): OG0000393_tree ,
OG_05_0000380 (LandPlants) Phylogenetic Tree(s): OG_05_0000380_tree ,
OG_06_0005882 (SeedPlants) Phylogenetic Tree(s): OG_06_0005882_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g082980.3.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00265700 evm_27.TU.AmTr_v1... RNA-binding KH domain-containing protein RCF3... 0.05 Archaeplastida
AMTR_s00033p00116200 evm_27.TU.AmTr_v1... KH domain-containing protein HEN4 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01021523001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01029591001 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Archaeplastida
GSVIVT01038571001 No alias RNA-binding KH domain-containing protein RCF3... 0.04 Archaeplastida
Gb_18830 No alias RNA-binding KH domain-containing protein RCF3... 0.04 Archaeplastida
LOC_Os09g32300.1 No alias KH domain-containing protein HEN4 OS=Arabidopsis... 0.03 Archaeplastida
MA_10429211g0010 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
MA_10433640g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 Archaeplastida
MA_3715g0020 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Archaeplastida
Mp3g04880.1 No alias RNA-binding KH domain-containing protein RCF3... 0.04 Archaeplastida
Zm00001e004486_P005 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.06 Archaeplastida
Zm00001e012623_P002 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
Zm00001e026127_P004 No alias RNA-binding KH domain-containing protein RCF3... 0.04 Archaeplastida
Zm00001e030716_P002 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
Zm00001e037033_P001 No alias RNA-binding KH domain-containing protein RCF3... 0.04 Archaeplastida
Zm00001e037947_P004 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 63 112
IPR004088 KH_dom_type_1 595 657
IPR004088 KH_dom_type_1 173 241
No external refs found!