1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g093390.4.1

Solyc03g093390.4.1


Description : Expansin-B15 OS=Oryza sativa subsp. japonica (sp|q7xt40|exb15_orysj : 242.0)


Gene families : OG0000383 (Archaeplastida) Phylogenetic Tree(s): OG0000383_tree ,
OG_05_0000369 (LandPlants) Phylogenetic Tree(s): OG_05_0000369_tree ,
OG_06_0000947 (SeedPlants) Phylogenetic Tree(s): OG_06_0000947_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g093390.4.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g42650.1 No alias beta-class expansin 0.02 Archaeplastida
LOC_Os02g44106.1 No alias Putative expansin-B14 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os03g01260.1 No alias Expansin-B8 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os04g46650.1 No alias Expansin-B5 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os10g40700.1 No alias Expansin-B6 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Pp3c1_37980V3.1 No alias expansin B3 0.02 Archaeplastida
Solyc10g008440.3.1 No alias beta-class expansin 0.05 Archaeplastida
Zm00001e002335_P001 No alias Expansin-B3 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e002337_P001 No alias Expansin-B3 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e015337_P001 No alias Expansin-B11 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Zm00001e033407_P001 No alias Expansin-B11 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e036860_P001 No alias Putative expansin-B14 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e036907_P001 No alias Putative expansin-B14 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e037879_P001 No alias Expansin-B3 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e037881_P001 No alias Expansin-B2 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e037884_P001 No alias Expansin-B6 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
Zm00001e041521_P001 No alias Expansin-B5 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0001101 response to acid chemical IEP Neighborhood
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0005384 manganese ion transmembrane transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006576 cellular biogenic amine metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006873 cellular ion homeostasis IEP Neighborhood
BP GO:0006875 cellular metal ion homeostasis IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008272 sulfate transport IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
BP GO:0009308 amine metabolic process IEP Neighborhood
BP GO:0009309 amine biosynthetic process IEP Neighborhood
BP GO:0010035 response to inorganic substance IEP Neighborhood
BP GO:0010167 response to nitrate IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Neighborhood
MF GO:0015116 sulfate transmembrane transporter activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
BP GO:0015706 nitrate transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0030003 cellular cation homeostasis IEP Neighborhood
BP GO:0030026 cellular manganese ion homeostasis IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0030410 nicotianamine synthase activity IEP Neighborhood
BP GO:0030417 nicotianamine metabolic process IEP Neighborhood
BP GO:0030418 nicotianamine biosynthetic process IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0044106 cellular amine metabolic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0046916 cellular transition metal ion homeostasis IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0048878 chemical homeostasis IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
BP GO:0050801 ion homeostasis IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055065 metal ion homeostasis IEP Neighborhood
BP GO:0055071 manganese ion homeostasis IEP Neighborhood
BP GO:0055076 transition metal ion homeostasis IEP Neighborhood
BP GO:0055080 cation homeostasis IEP Neighborhood
BP GO:0055082 cellular chemical homeostasis IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072348 sulfur compound transport IEP Neighborhood
BP GO:0072350 tricarboxylic acid metabolic process IEP Neighborhood
BP GO:0072351 tricarboxylic acid biosynthetic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0098771 inorganic ion homeostasis IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Neighborhood
BP GO:1901698 response to nitrogen compound IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 84 163
IPR007117 Expansin_CBD 175 268
No external refs found!