Solyc03g093560.1.1

Description : transcription factor (ERF)

Gene families : OG0000003 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000001 (LandPlants) Phylogenetic Tree(s): OG_05_0000001_tree ,
OG_06_0004644 (SeedPlants) Phylogenetic Tree(s): OG_06_0004644_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g093560.1.1
Cluster	HCCA: Cluster_240

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00264660	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
AMTR_s00009p00147970	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
AMTR_s00016p00238800	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AMTR_s00021p00185480	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
AMTR_s00025p00249140	evm_27.TU.AmTr_v1...	Cell wall.cutin and suberin.biosynthesis...	0.02	Archaeplastida
AMTR_s00111p00113030	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AMTR_s00129p00119770	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AMTR_s00148p00084540	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
AT1G19210	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT1G50640	ATERF3, ERF3	ethylene responsive element binding factor 3	0.06	Archaeplastida
AT3G15210	ATERF4, RAP2.5,...	ethylene responsive element binding factor 4	0.07	Archaeplastida
AT3G20310	ERF7, ATERF7, ATERF-7	ethylene response factor 7	0.04	Archaeplastida
AT4G34410	RRTF1	redox responsive transcription factor 1	0.04	Archaeplastida
AT5G47230	ERF5, ATERF-5, ATERF5	ethylene responsive element binding factor 5	0.06	Archaeplastida
AT5G52020	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
GSVIVT01013914001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01013916001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01013918001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
GSVIVT01013923001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01013929001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01013931001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
GSVIVT01013934001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01013935001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.05	Archaeplastida
GSVIVT01019519001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
GSVIVT01019860001	No alias	External stimuli response.temperature.ICE-CBF cold...	0.03	Archaeplastida
GSVIVT01035502001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
GSVIVT01036389001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.05	Archaeplastida
Gb_07992	No alias	Ethylene-responsive transcription factor RAP2-9...	0.02	Archaeplastida
Gb_24321	No alias	transcription factor (DREB)	0.02	Archaeplastida
Gb_24891	No alias	transcription factor (ERF)	0.02	Archaeplastida
Gb_26662	No alias	transcription factor (ERF)	0.03	Archaeplastida
Gb_26667	No alias	transcription factor (ERF)	0.07	Archaeplastida
Gb_26855	No alias	transcription factor (DREB)	0.03	Archaeplastida
Gb_26858	No alias	transcription factor (DREB)	0.03	Archaeplastida
Gb_29263	No alias	transcription factor (DREB)	0.03	Archaeplastida
Gb_35015	No alias	transcription factor (ERF)	0.05	Archaeplastida
Gb_36992	No alias	transcription factor (DREB)	0.02	Archaeplastida
LOC_Os02g35240.1	No alias	transcription factor (DREB)	0.05	Archaeplastida
LOC_Os02g42585.1	No alias	transcription factor (DREB)	0.05	Archaeplastida
LOC_Os02g43790.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
LOC_Os02g45450.1	No alias	Dehydration-responsive element-binding protein 1G...	0.02	Archaeplastida
LOC_Os02g52670.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os02g54050.1	No alias	Ethylene-responsive transcription factor ERF018...	0.03	Archaeplastida
LOC_Os04g57340.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
LOC_Os06g06540.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
LOC_Os06g10780.1	No alias	transcription factor (DREB)	0.03	Archaeplastida
LOC_Os08g36920.1	No alias	transcription factor (ERF)	0.05	Archaeplastida
LOC_Os09g28440.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
LOC_Os11g06770.2	No alias	transcription factor (ERF)	0.03	Archaeplastida
MA_10427586g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_10431706g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_18454g0020	No alias	transcription factor (ERF)	0.06	Archaeplastida
MA_19854g0020	No alias	transcription factor (DREB)	0.04	Archaeplastida
MA_203191g0010	No alias	transcription factor (ERF)	0.04	Archaeplastida
MA_81029g0010	No alias	transcription factor (ERF)	0.04	Archaeplastida
MA_914123g0010	No alias	transcription factor (DREB)	0.02	Archaeplastida
MA_9565555g0010	No alias	Ethylene-responsive transcription factor ERF016...	0.02	Archaeplastida
Mp1g20040.1	No alias	transcription factor (ERF)	0.01	Archaeplastida
Mp4g17430.1	No alias	Ethylene-responsive transcription factor ERF112...	0.01	Archaeplastida
Pp3c13_4270V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c16_13260V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.01	Archaeplastida
Pp3c1_7740V3.1	No alias	ethylene responsive element binding factor 1	0.02	Archaeplastida
Pp3c25_1760V3.1	No alias	related to AP2 11	0.01	Archaeplastida
Pp3c26_14710V3.1	No alias	ethylene responsive element binding factor 1	0.01	Archaeplastida
Pp3c27_1350V3.1	No alias	ERF domain protein 12	0.07	Archaeplastida
Pp3c4_23930V3.1	No alias	ethylene responsive element binding factor 1	0.02	Archaeplastida
Pp3c4_2660V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Smo68470	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
Solyc01g090340.3.1	No alias	Ethylene-responsive transcription factor 13...	0.04	Archaeplastida
Solyc03g124110.2.1	No alias	transcription factor (DREB). transcription factor (CBF/DREB1)	0.03	Archaeplastida
Solyc05g052050.1.1	No alias	transcription factor (ERF)	0.06	Archaeplastida
Solyc06g035700.1.1	No alias	transcription factor (DREB)	0.03	Archaeplastida
Zm00001e004208_P001	No alias	transcription factor (DREB)	0.03	Archaeplastida
Zm00001e007352_P001	No alias	transcription factor (ERF)	0.02	Archaeplastida
Zm00001e013927_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e015429_P001	No alias	transcription factor (DREB)	0.03	Archaeplastida
Zm00001e015869_P001	No alias	transcription factor (DREB)	0.03	Archaeplastida
Zm00001e016064_P001	No alias	transcription factor (ERF)	0.04	Archaeplastida
Zm00001e025064_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e026989_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e037869_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e041539_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
MF	GO:0016830	carbon-carbon lyase activity	IEP	Neighborhood
MF	GO:0016831	carboxy-lyase activity	IEP	Neighborhood
MF	GO:0019842	vitamin binding	IEP	Neighborhood
MF	GO:0030170	pyridoxal phosphate binding	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0070279	vitamin B6 binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	104	154

External Links

No external refs found!

Solyc03g093560.1.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation