1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g098070.3.1

Solyc03g098070.3.1


Description : C2H2 zinc finger transcription factor


Gene families : OG0000200 (Archaeplastida) Phylogenetic Tree(s): OG0000200_tree ,
OG_05_0000106 (LandPlants) Phylogenetic Tree(s): OG_05_0000106_tree ,
OG_06_0000058 (SeedPlants) Phylogenetic Tree(s): OG_06_0000058_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g098070.3.1
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00106830 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AT1G03840 MGP C2H2 and C2HC zinc fingers superfamily protein 0.03 Archaeplastida
AT4G02670 AtIDD12, IDD12 indeterminate(ID)-domain 12 0.03 Archaeplastida
AT5G03150 JKD C2H2-like zinc finger protein 0.04 Archaeplastida
GSVIVT01010283001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
GSVIVT01010284001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
GSVIVT01010961001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.05 Archaeplastida
GSVIVT01035391001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
LOC_Os01g09850.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os01g14010.1 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
LOC_Os03g10140.1 No alias C2H2 zinc finger transcription factor. elicitor peptide... 0.04 Archaeplastida
LOC_Os03g13400.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os08g36390.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os10g28330.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_10430013g0020 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
MA_26324g0010 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Pp3c5_20980V3.1 No alias C2H2-like zinc finger protein 0.05 Archaeplastida
Zm00001e000980_P002 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e026143_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e035365_P003 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Neighborhood
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Neighborhood
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
BP GO:0006751 glutathione catabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009894 regulation of catabolic process IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016229 steroid dehydrogenase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016842 amidine-lyase activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0042176 regulation of protein catabolic process IEP Neighborhood
BP GO:0042219 cellular modified amino acid catabolic process IEP Neighborhood
BP GO:0043171 peptide catabolic process IEP Neighborhood
BP GO:0044273 sulfur compound catabolic process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
CC GO:1905369 endopeptidase complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!