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  5. Solyc03g111760.3.1

Solyc03g111760.3.1


Description : Protein argonaute 4A OS=Oryza sativa subsp. japonica (sp|q9sdg8|ago4a_orysj : 848.0)


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0001060 (LandPlants) Phylogenetic Tree(s): OG_05_0001060_tree ,
OG_06_0001214 (SeedPlants) Phylogenetic Tree(s): OG_06_0001214_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g111760.3.1
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00114260 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
AMTR_s00122p00122810 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
AT2G27880 AGO5 Argonaute family protein 0.03 Archaeplastida
AT5G21030 No alias PAZ domain-containing protein / piwi domain-containing protein 0.04 Archaeplastida
ChrSy.fgenesh.mRNA.6 No alias no hits & (original description: none) 0.02 Archaeplastida
GSVIVT01001941001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
GSVIVT01012529001 No alias Protein argonaute 7 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
GSVIVT01030512001 No alias Chromatin organisation.DNA methylation.canonical... 0.07 Archaeplastida
Gb_13708 No alias siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.02 Archaeplastida
LOC_Os06g51310.2 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.03 Archaeplastida
MA_10431691g0010 No alias Protein argonaute 16 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_14457g0010 No alias Protein argonaute 4A OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_14457g0020 No alias Protein argonaute 4B OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_594g0010 No alias Protein argonaute PNH1 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Smo98227 No alias Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
Zm00001e011855_P002 No alias Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e013340_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003100 PAZ_dom 285 408
IPR003165 Piwi 565 895
IPR014811 ArgoL1 227 274
IPR032472 ArgoL2 427 465
IPR032474 Argonaute_N 45 205
No external refs found!