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  5. Solyc03g112420.3.1

Solyc03g112420.3.1


Description : Putative pentatricopeptide repeat-containing protein At1g64310 OS=Arabidopsis thaliana (sp|q9c7v5|pp104_arath : 556.0)


Gene families : OG0009772 (Archaeplastida) Phylogenetic Tree(s): OG0009772_tree ,
OG_05_0010563 (LandPlants) Phylogenetic Tree(s): OG_05_0010563_tree ,
OG_06_0010228 (SeedPlants) Phylogenetic Tree(s): OG_06_0010228_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g112420.3.1
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AT1G64310 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
Zm00001e020753_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 69 113
IPR002885 Pentatricopeptide_repeat 168 211
IPR002885 Pentatricopeptide_repeat 370 419
IPR002885 Pentatricopeptide_repeat 272 301
No external refs found!